Pseudomonas fulva NBRC 16636 = DSM 17004, Q382_RS0113705
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fulva NBRC 16637 = DSM 17717 Q382DRAFT_scaffold00016.16_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTCGGGTCCATATCACCTACGACGTGGACATCGGCGATGCGCTCGAAAAAAAGGAGCTGCCCTTCGTCGTCGGTGTGTTGGGCGACTTCTCCGGCAACC CGCTGGAGCCGCTGCCTAAGCTCAAGGACCGCAAGTTCGTTTTCATCGACCGCGATAACTTCAACGGTGTGCTCAAGGGCATCAAGCCACGCCTGACCTA CCGCGTCGACAACACATTGGCCAAGAACGGCACGCAACTGGGCGTCGAACTCAACTTCAACACCCTCGAAGACTTCGAGCCACAGAACGTGGTCAAGCAG GTCGAGCCACTGCGCAAGCTGTTGGAAGTGCGTAACAAGCTGGCCGACCTGCGCAACAAGATGGGCGGCAACGACAAGCTCGAAGAGCTGCTCATGGACG TACTGCAGAACACTGAGAAGCTGAAAACCCTCGGCAAGGAATTCGGGCGCGAAGCCGCCGTATCTGTCGACAAAGGCAACGAGTAAGCAGGAGCCAGACG
|
|
| DNA Sequence for Gene |
>Q382_RS0113705
ATGACCGACAAGCAAGCGTTGTCCCAACAGGAATCCGATCTGGTCGAAGTCGAGAACTTCGCGCCCAAAGCATCCCTGCTCGACAGCATCATTTCCGAAA GCCGCGTGGCCCGTTCGGAAACCGAGCGCAGCCGCACCCGCGACCTGATCGGCGAACTGGTCGGTCAGGTACTTGAGGGCGAACTGACCCCCAGCAAGGA CCTGATCGCCGTGCTCGATGCACGTATCGCTGAGATCGATGCGATGCTGTCTGAGCAGATGAACGAGATCATGCACGCCAGCGAGTTCCAGCAGCTCGAG GCCTCCTGGCGCGGCCTGAAATACCAGGTTGACCAGACAGAGACCAGCACCACGCTGAAGATCCAGTTGCTCAACGCCTCGAAGAAAGATCTGGTACGCG ACCTCAAGGCTGCTTCCGAATTCGACCAGAGCGCGTTGTTCAAGAAAATCTACGAAGAAGAGTACGGCACCTTCGGTGGTGCACCCTTCGGTATGCTGGT AGGTGACTACGAGTTTACTCGCAGCCCCGAAGACATGTATCTGCTCGAAGAAATCTCCCACGTCGCCGCAGCCGCCCACGCTCCGTTCATTTCTGCAGCA TCGCCGGAGCTGTTCGGCTGGGACTCGTTCACCGACATGTCCGGCCCGCGCGACCTGGCGAAGATCTTCGACACCGTCGAATACGCCAAGTGGAAGTCGT TCCGTGCATCTGAGGACTCACGTTACGTCGGCCTCACCCTACCGCACGTGCTCGGTCGCCTGCCCTACGGCCCAGATACAGTGCCCGTGGATGAGTTCAA CTTCGTCGAAAGCGTCGATGGCCGCGACCACAACAAATACCTGTGGATGAACGCCGCCTACGCCCTAGGCACTCGCGTGACCGATGCCTTCTCCCGCTAC GGCTGGTGCGTGGCGATCCGGGGCGTGGAAGGCGGCGGCCTGGTCGAAGGCCTGCCAACCCACACCTTCAAGACCGACGACGGTGAAATCGCGCTCAAAT GCCCGACTGAAATCGCCATCACGGACCGTCGCGAGAAAGAATTGTCGGACCTGGGCTTCATCCCCCTGGTGCACTGCAAGGGGACCGACTACGCCGCGTT CTTCGGCACCCAGTCGACCCAGAAGCAGAAGCAGTACAACACTGATATCGCCAATGCCAACGCACGGCTCTCGGCGCAGCTGCAGTACATCTTCGCTACC TCGCGCATCGCTCACTATATGAAGGCGATCATGCGCGACAAGATCGGCAGCTTTGCCTCGCGCAAGGATGTCGAGTCGTTCCTCAACGAATGGCTGGCCG ACTACGTGCTGCTAGACGACACCGCTAGCCAGGAAGCCAAGGCCAAATTCCCGCTGCGCGAAGCCAGCGTCGAAGTGGTCGAGGTGCCGGGCAAGCCAGG TGCCTACAAAGCCGTGGCGTTCCTGCGCCCGCATTACCAGCTCGACGAATTGACCGCCTCGCTGCGACTGGTGGCCGAACTGCCGCAGTCTACCCGCAGC TGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGAATACGAGCCAGGAAGGCGTAATTCACCCATGAGCCGTAACTATCAATTAGTGCCAACACTGTTGGATCGCTTGCTTGATGACACTCCTCATCAAGC AAGCGAGGCGGTTTCCAGGCGGTTGTGCTCCCTGGCCGAATACAAGGCCAGCCTGATCCGCGACCTGGAAGTGCTAGTCAACACGCGTCAGTGCATGGTC GCCGAACGTCTCGGCGGCCATGGACAACTGGCTGGCACCATTCTGGAATATGGCATGCCCGACTTCACCAGCAAGGGCGTGCTCAACCCCGAGGACCGGC GCCTGATTCAGGCCCAGCTTGAACGTGCCATCACCGTCGGGGACAAGCGCTTTCGTGCCGTACGCGTACAACTCATGACCCAACAAGTGGGCCACCGCAT GCTGACCTTCCGGGTCGATGCCGTGTTGCACCTGCAGGATGCCACCCGCCAGGTCTCGTTCGACGCCGTACTGCAGATCAATACCCAAGAATACAAAGTG
|
|
| Amino Acid Sequence |
>EvpB family type VI secretion protein
MTDKQALSQQESDLVEVENFAPKASLLDSIISESRVARSETERSRTRDLIGELVGQVLEGELTPSKDLIAVLDARIAEIDAMLSEQMNEIMHASEFQQLE ASWRGLKYQVDQTETSTTLKIQLLNASKKDLVRDLKAASEFDQSALFKKIYEEEYGTFGGAPFGMLVGDYEFTRSPEDMYLLEEISHVAAAAHAPFISAA SPELFGWDSFTDMSGPRDLAKIFDTVEYAKWKSFRASEDSRYVGLTLPHVLGRLPYGPDTVPVDEFNFVESVDGRDHNKYLWMNAAYALGTRVTDAFSRY GWCVAIRGVEGGGLVEGLPTHTFKTDDGEIALKCPTEIAITDRREKELSDLGFIPLVHCKGTDYAAFFGTQSTQKQKQYNTDIANANARLSAQLQYIFAT SRIAHYMKAIMRDKIGSFASRKDVESFLNEWLADYVLLDDTASQEAKAKFPLREASVEVVEVPGKPGAYKAVAFLRPHYQLDELTASLRLVAELPQSTRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|