Pseudomonas chlororaphis HT66, M217_RS0132460

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas chlororaphis HT66 contig000050, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCCGTAACCGTGCTCCCCGGGTGCAGATCGAGTACGACGTAGAGCTTTACGGTGCGGAGAAGAAGGTGCAGTTGCCCTTCGTCATGGGGGTGATGGCCGA CCTTGTCGGCAAGCCCGCCGAGCCGCTGCCGGCGGTGGCCGACCGCAAGTTCCTGGAGATCGATGTCGACAACTTCGACTCGCGGCTCAAGGCGATGAAG CCGCGGGTGGCGTTCAACGTGCCCAATGCCCTGACCGGCGAAGGCAACCTGAGCCTGGACATCACGTTCGAGAGCATGGACGACTTCAGCCCGGCCGCGG TGGCGCGCAAGGTCGATGCCCTCAACCAACTGCTCGAAGCCCGCACCCAGCTGGCCAATCTGCTGACCTACATGGACGGCAAGACCGGCGCCGAGGACAT GATCATGAAAGCGATCAAGGACCCGGCCCTGTTGCAGGCCTTGGCCAGCGCGCCGAAACCGACCGAACCCGAGCCGCAAGCCTGACAGAGGACGCAGACC
DNA Sequence for Gene
>M217_RS0132460
ATGGCCGAATTGATGAAAGACCAGCAGGCCCAGGAAGGCGCCGCGACCGGACAACCGAGCGACTTCGCCGCCTTGCTCCTGCAAGAGTTCAAACCCAAGA CCGAGCACGCCCGCGAGGCGGTGGAAAGCGCCGTGCGCACCCTGGCCGAACAGGCCCTGAGCAAGACCGAGCTGATCTCCAACGACGCGATCAAATCCAT CGAATCGATCATCGCCGCGATCGATGCCAAGCTCACCGCGCAGGTCAACCTGATCATGCATCACGCCGATTTCCAGCAACTGGAAAGCGCCTGGCGCGGC CTGCACTACCTGGTCAACAACACGGAAACCGACGATCAGCTGAAGATCCGCGTGATGAGCATCGCCAAGGGCGACCTGCACAAGACCCTGAAGAAGTTCA AGGGCACCGCCTGGGACCAGAGCCCGATCTTCAAGAAAATGTACGAAGAGGAATACGGCCAGTTCGGCGGCGAGCCGTTCGGCTGCCTGGTGGGCGATTA CTACTTCGACCAGTCGTCACCGGACGTCGAGCTGCTCGGCGAGATGGCCAAGGTCTGCGCGGCGATGCATGCGCCTTTCATTAGCGCGGCCTCGCCGACG GTGATGGGCATGGGCTCCTGGCAGGAGCTGTCCAACCCGCGCGACCTGACCAAGATCTTCACCACGCCGGAATACGCCGCCTGGCGTTCGCTGCGCGATT CCGAGGACTCACGCTACATCGGCCTGACCATGCCGCGTTTCCTCGCCCGCCTGCCCTACGGCGCCAAGACCGACCCGGTGGATGCCTTCGCCTTCGAAGA GGAAGCCACCGGCGCCGACAGCTCCAAGTACACCTGGGCCAACTCGGCCTATGCCATGGCGGTGAACATCAACCGCTCGTTCAAGCTCTATGGCTGGTGC TCGCGGATTCGCGGCGTGGAGTCCGGCGGCGAGGTGCCGAACCTGCCGACGCACACCTTCCCCACCGACGACGGTGGCGTGGACATGAAGTGCCCGACCG AAATCGCCATCGCCGACCGGCGCGAGGCGGAGCTGGCGAAGAACGGTTTCATGCCGCTGCTGCACAAGAAGAACACCGACCTCGCCGCCTTCATCGGCGC GCAATCGCTGCAGAAGCCGGCCGAGTATGACGACCCCGACGCCACCGCCAACGCCAACCTGGCGGCACGCCTGCCCTACCTGTTCGCCACCTGCCGCTTC GCCCATTACCTGAAGTGCATCGTTCGCGACAAGATCGGCTCGTTCAAGGAAAAGGACGACATGCAGCGCTGGCTGCAGAACTGGATTCTCAATTACGTGG ACGGCGACCCGGCCCACTCCACCGAAACCACCAAGGCGCAGCATCCCTTGGCCGCGGCGGAGGTGGTGGTCGAGGAAATCGAGGGCAATCCCGGTTACTA CAGCTCGAAGTTCTACCTGCGCCCGCACTACCAGCTCGAAGGGCTCACGGTATCGCTACGGCTGGTATCCAAGCTTCCATCCGCCAAGGCGGTTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCCATCCCAGGTGGCACCCGCCGTGGTGGCGGGTGCACTGCAACACAGCGTGGCCAATCGCTGGAGCACAGTGGTGTAGACCACTCAAGGAGGCATGATG GCTGTTGATATGTTTATCAAGATCGGCGACGTCAAGGGCGAGTCCCAGGACAAGAACCACAAGGAGGAGATCGACGTGCTCTCCTGGAGCTGGGCCATGG CCCAGTCCGGCAACATGCATGTGGGCGGTGGCGGCGGTGCCGGCAAGGTCAATATCCATGACCTGACGTTGACCAAGTGGGTGGACAAATCCTCCCCCAA CCTGATGATGGCCTGCTCCAGCGGCAAGCATTACGACGAGGCCAAGCTGACGGTGCGCAAGGCCGGCGGCGACGATCCGGTGGAGTACCTGACCATCACC CTCAAGGAGGTCCTGGTGTCCTCGATCGGCACCGGCGGCAGCGGCGGCGCCGATCGCCTGACCGAAAACATCGCGCTGAATTTCGGCCAGGTGCTGGTCG
Amino Acid Sequence
>EvpB family type VI secretion protein
MAELMKDQQAQEGAATGQPSDFAALLLQEFKPKTEHAREAVESAVRTLAEQALSKTELISNDAIKSIESIIAAIDAKLTAQVNLIMHHADFQQLESAWRG LHYLVNNTETDDQLKIRVMSIAKGDLHKTLKKFKGTAWDQSPIFKKMYEEEYGQFGGEPFGCLVGDYYFDQSSPDVELLGEMAKVCAAMHAPFISAASPT VMGMGSWQELSNPRDLTKIFTTPEYAAWRSLRDSEDSRYIGLTMPRFLARLPYGAKTDPVDAFAFEEEATGADSSKYTWANSAYAMAVNINRSFKLYGWC SRIRGVESGGEVPNLPTHTFPTDDGGVDMKCPTEIAIADRREAELAKNGFMPLLHKKNTDLAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRF AHYLKCIVRDKIGSFKEKDDMQRWLQNWILNYVDGDPAHSTETTKAQHPLAAAEVVVEEIEGNPGYYSSKFYLRPHYQLEGLTVSLRLVSKLPSAKAV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site