Pseudomonas chlororaphis HT66, M217_RS0121860
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas chlororaphis HT66 contig000040, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAAACAGGATCAGCGTCGCCTGAACGCGCGCAGCGTGTTGCTGGCCGTCCCGGAACCCTTGCTGAGCCGCTTGATGCTCGCGGCTCAAGCCGGCGTTCTG CGCCTGGCGGTACGCAGCGCCGACGAGAAACGCCTGGCGCATTACTGGGCGGGCAAAAAAAGCGCGTCGAAGCATCTGCAAAACCTCGACAGGTCCCTGA TCCAGTTCAACCAGCTGGCCCTGTCCACCCCTCCTCCTTCCAGCGCCAGAACCTTCGACGCCGCAGCGCGTCGCGCCCAGATAGAAGTCATACGCGGTAT CGAAGCGAGCCAACAAACCCCCTGATCATGCAAGGACACTTCTTCATGTCCAATGATTGCCAGCCCCTGTGCAAAGGCCTGATCCGGGCCCTGATGTCGA GCGGTGTACCTGTCCAGGGCGACGTGCCGCTGCGCAACCATGACCCGGACTGGTACTCCCTGGAAAACCGCAACTTCAATCAACGCAGTGGGCTATCGCA
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| DNA Sequence for Gene |
>M217_RS0121860
ATGAGTCAGAACCTGAGCCAGACCTTCCTCGCGATCACCCGCAACGGCACCGACCTGGAATGGTTGCAAGGCGCCCTGGCGCCACTCGGGCAGGTGGTCA GTGCGGGCAGCGGCAGCCTCGACGAGTTGCTGGCGCTGGTGGATGTGACGTGCGCCAGCCTGGTCTTCGTCGGCCTCGATCGCGAGCATGTGGTCACCCA GGCGGCGCTGATCGAGGGCGCCCTGGAGGCCAAGCCGATGTTGGCCATCGTCGCCCTGGGCGACGGCATGGACAACCAACTGGTACTCAACGCCATGCGC GCCGGGGCCCGCGATTTCGTGGCCTACGGCTCGCGCTCCAGCGAGGTGGCCGGCCTGGTACGGCGCCTGAGCAAACGCCTGCCCCAGGTCATGCCGAGCA CCCAGCTCGGCGGCCTGACCGTGCTCTACGGCACCCAGAGCGATGCCGATGGCGCCCTGCTCGCCAGCCACCTGGCGCTGGTGGTACAGAAGAGCGGCCA GCAGACCCTGCTGCTCGACCTGGGCCTGCCGCGCGGCGACAGCCTGGCGCTGCTGGGGCTGGAAAGTTCGTTCCACTTCGGCGATGCCTTGCGCCATCTG CGACGCCTGGATACGACCCTGATCGACAGTGCCTTCACCAGCACCGAAGCCGGGCTGCGGATCCTGGCCTATGCCGACCATGACGAGCCGCTGGAGCGCA CCAGCGCCGCCGAGTTGTACATGCTGCTCAGCGCCTTGCGCCAGCACTTCCAGCACATCGTGGTGAACCTCACCGGACAACCGGACAGCGAAGCCCTGCG CACCTTCGTCGGCCATTGCGACAAGTTGCTCTGGTACACCGACCAGAGCGTGCTCGATTGCCGCCGCAACCTCGCGGTGCTCAACCTCTGGCGCGAAAAA GGCATGAAGCTGGAACACGCCCGCCTGCTGCTCGACCGCTACCTGCGTGGGGTCGCGCCAGATGCGGAAACCCTGGGCAAGACCTTTGCCCTGGAAGTGA TCGCGGTCCTGGCCTATAGCCCCGAGGTGCGTCTCAACGCGAAAAACCAGGGCGTCACGCTGTTCGAACTGGCCCCTCGCGAAGGCCTGACCCAAGCCCT GAAGACCCTCGGCGAGCGCCTGGCCAGACGCTCCCAAGGGCTGCCCACGGCAAAGCCCGGCTGGTTCGAGCGCCTTAGGGGAAGTAGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAGAGAAAAACTTTTCGGCGCCCAGCCCCACAACACGGTCGGCAACACCGATCACGAGGGCCTGAAGCTGGTGCTGCATCGCTACGTTATCGACGCCAT CGAAGAGTCGGGGAAAAACCTGCTGGACGGTTCGCGCCAGGCGTTGGCGCACTTCATTACCGACAAGGTGGCCGAGTACATCTCCCGCCTGCACCTGGCA ATTTCCCGCTATGAAATGGAGCGCCTGGCCGAAGAGCTGGTGGATGAACTCACCGGTTTCGGCCCGCTGGAAGTGTTGCTGCGCGACCCGGCGGTGACCG AGATCCTGGTCAATGGCCCGCACCGGGTGTTCGTCGAGCGCGATGGCGTGCTGCACCAGAGCGACCTGCGTTTCATCGATGCGCACCATGTGGAGCGGGT CATGCAACGCATCCTCGCGCCCCTGGGCCGACGTCTCGACGAGTCCTCGCCCATGGTCGATGCGCGGATGCCCGACGGTAGCCGGGTCAACGCGATCATC
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| Amino Acid Sequence |
>pilus assembly protein
MSQNLSQTFLAITRNGTDLEWLQGALAPLGQVVSAGSGSLDELLALVDVTCASLVFVGLDREHVVTQAALIEGALEAKPMLAIVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVAGLVRRLSKRLPQVMPSTQLGGLTVLYGTQSDADGALLASHLALVVQKSGQQTLLLDLGLPRGDSLALLGLESSFHFGDALRHL RRLDTTLIDSAFTSTEAGLRILAYADHDEPLERTSAAELYMLLSALRQHFQHIVVNLTGQPDSEALRTFVGHCDKLLWYTDQSVLDCRRNLAVLNLWREK GMKLEHARLLLDRYLRGVAPDAETLGKTFALEVIAVLAYSPEVRLNAKNQGVTLFELAPREGLTQALKTLGERLARRSQGLPTAKPGWFERLRGSR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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