Pseudomonas chlororaphis HT66, M217_RS0119450

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.580.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.580.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003896 DNA primase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002811
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006269 DNA replication, synthesis of RNA primer
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002811
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.580.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016779 nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF10410
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF002811 DnaG IPR030846 DNA primase DnaG, bacteria 2 648 0.0
CDD cd03364 TOPRIM_DnaG_primases IPR034151 Bacterial DnaG primase, TOPRIM domain 261 342 1.16832E-34
NCBIfam TIGR01391 JCVI: DNA primase IPR006295 DNA primase, DnaG 5 420 0.0
Pfam PF10410 DnaB-helicase binding domain of primase IPR019475 DNA primase, DnaB-helicase binding domain 373 425 3.1E-10
PANTHER PTHR30313 DNA PRIMASE - - 1 640 0.0
Pfam PF08275 DNA primase catalytic core, N-terminal domain IPR013264 DNA primase, catalytic core, N-terminal 126 253 1.4E-43
MobiDBLite mobidb-lite consensus disorder prediction - - 93 108 -
FunFam G3DSA:3.90.980.10:FF:000001 DNA primase - - 110 242 4.7E-49
Pfam PF13662 Toprim domain IPR006171 TOPRIM domain 261 327 8.6E-17
FunFam G3DSA:3.90.580.10:FF:000001 DNA primase - - 1 101 5.1E-42
Gene3D G3DSA:3.90.580.10 - IPR036977 DNA Primase, CHC2-type zinc finger 2 102 2.3E-36
MobiDBLite mobidb-lite consensus disorder prediction - - 93 114 -
Gene3D G3DSA:1.10.860.10 DNAb Helicase; Chain A IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal 503 647 6.1E-33
MobiDBLite mobidb-lite consensus disorder prediction - - 466 510 -
Gene3D G3DSA:3.40.1360.10 - - - 243 370 4.3E-41
SUPERFAMILY SSF57783 Zinc beta-ribbon - - 4 101 6.63E-38
SUPERFAMILY SSF56731 DNA primase core - - 116 427 5.23E-109
MobiDBLite mobidb-lite consensus disorder prediction - - 478 502 -
Pfam PF08278 DNA primase DnaG DnaB-binding IPR013173 DNA primase DnaG, DnaB-binding domain 518 639 7.6E-24
Gene3D G3DSA:3.90.980.10 - IPR037068 DNA primase, catalytic core, N-terminal domain superfamily 113 242 9.6E-49
Hamap MF_00974 DNA primase [dnaG]. IPR030846 DNA primase DnaG, bacteria 4 641 30.011301
SMART SM00493 toprim5 IPR006171 TOPRIM domain 261 332 5.9E-20
Gene3D G3DSA:1.20.50.20 DnaG, RNA polymerase domain, helical bundle - - 371 428 8.1E-21
SMART SM00400 primzinc3 IPR002694 Zinc finger, CHC2-type 36 90 3.3E-34
SUPERFAMILY SSF117023 DNA primase DnaG, C-terminal domain - - 515 642 6.28E-31
Pfam PF01807 CHC2 zinc finger IPR002694 Zinc finger, CHC2-type 6 100 1.5E-40
FunFam G3DSA:3.40.1360.10:FF:000002 DNA primase - - 243 370 2.1E-52
SMART SM00766 dnag_dnab_bind_seq8d IPR013173 DNA primase DnaG, DnaB-binding domain 514 640 2.5E-31

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.