Pseudomonas sp. URMO17WK12:I8, F639_RS0126285
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I8 F639DRAFT_scaffold00018.18, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGCAGTCAAGCCAGGCATCTTCGACCTGGACGACATCGACCACTTCAGCACCCGTGCCGTGAGCTTCTTCCTCGGCCTGCCTGGCCCGCGTCATCCGAA GCAGGCCTTTGACGTGATGGTGGCTGCGGCGCGCAAGCTGGCCCATGAGCTCAATGGCGAGCTCAAGGACGACCAGCGCAGCGTGCTGACCGCGCAAACC ATCGAGCACTACCGCCAGCGCATCGTCGAGTTCGAGCGCCGTGCGCTGACCCAGAAACGCTGATAGATCCAGACGAAAGAGCAGCCTGTGGGCATGCTGG CCGGTTCAAGACGTGTTGTCGTCTGTGCCGGCCCTTTTCGCGGGCAAGCCCGCTCCCGCAGGTATGCCACTGCCCATGAGGCGTGTGGCGTACCTGCGGG AGCGGGCTTGCCCGCGAAGGGGCCGACACAGGTAGTCAGACTCTTAAGCCCCAAGCATCCCTCCAGGCTGCTCTTTTTGCTTTGCAAGAGACCCTGACCC
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| DNA Sequence for Gene |
>F639_RS0126285
ATGAACGCCGAAACCCGAATCCACGAACTGCGCGCCGAGCTCGACCAGCACAACTACCGCTACTACGTGCTCGACGAGCCAAGCGTGCCCGATGCCGAAT ACGATCGTCTGTTCAATGAACTGAAGGCGCTCGAAGCCGAGCACCCCCACCTGGTCACCCCTGATTCGCCAACCCAGCGTGTCGGGGGGGCTGCCTTGGC TGCCTTTAGCCAGGTGCGTCATGAAGTGCCGATGCTCAGCCTTGGCAACGCCTTCGAAGAAGCTGACCTGCGCGAATTCGGCCGCCGCGTGGTCGATGGG CTCGACCAGCCGGGCGCCGTGGATTTCAGCTGCGAACCGAAACTCGATGGCCTGGCAGTAAGCCTGCTGTACCGCGATGGTCAGTTGGTGCAAGGCGCTA CCCGTGGCGACGGCACGACCGGCGAAGACATCAGTGCCAATGTGCGCACCGTGCGCAACATCCCGCTGAAGCTGCAGGGCGAAGGCTGGCCCGCCGTGCT TGAAGTGCGTGGCGAGGTGTACATGAGCAAGGCCGGCTTCGACCGCCTCAATGCCGCCCAGGCCGAGGCCGGTGGCAAGACCTTCGCCAACCCTCGCAAC GCGGCGGCCGGCAGCCTGCGCCAGCTGGACTCGAAGATCACCGCCAGCCGCCCGCTGGAGTTCTGCTGCTACGGTGTCGGGCAGGTGTCCGAGAGCATCG GCGAGAGCCATATCGGCATTCTCGAGCAGCTCAAGCAGTGGGGCCTGCCGATCAGTCGCGAGCTCAGGCATGCGGCCGGCATCGAAGAGTGCCTGGCCTA CTACCGCGACATTGGCGAACGGCGCAACAGCCTGCCGTACGAGATCGATGGCGTGGTGTTCAAGGTCAACAGCCTGGCGGCTCAGCGCGAGCTGGGCTTC CGTGCGCGCGAACCACGCTGGGCCATCGCCCACAAGTTCCCGGCCATGGAAGAGCTCACCGAAGTGCTGGATGTGGAATTCCAGGTCGGCCGTACCGGCG CGGTCACGCCAGTGGCGCGCCTGAAGCCGGTCAAGGTGGCAGGTGTGACCGTGTCCAACGCCACCCTGCACAACATGGACGAAATCGCCCGGCTGGGCCT GCGCATCGGTGACACGGTGATCATTCGCCGTGCCGGTGACGTGATTCCCCAGGTGATGCAGGTGGTGCTCGAACGCCGCCCCGAAGATGCGCGGCCGGTC GAAGTGCCGACCGAGTGCCCGGTGTGTGGCTCCCAGGTCGAGCGCACTCAATTGGTCAAGCGCAGCAAGGGCAAGGAAACCACCAGCGAAGGCGCGGTGT ATCGATGCGTCGGCCGTCTGGCCTGTGGTGCCCAGCTCAAGCAGGCAATCATCCACTACGTTTCTCGCCGTGCCATGGACATTGATGGCTTGGGCGAGAA GAGCGTCGAGCAGTTGGTGGATGAGGACCTGATCGGCTCTCCGGCAGACCTGTACAAGTTGGAGTTCGACCAGATCGTCGGCCTTGAAGGTTTCGCCGAG GTTTCCAGCAGGAAACTGCTGGACGCCATCGAGGCCAGCAAACGCCCGAGCCTGGCGCGCTTCATCTATGCCCTGGGTATCCCGGATGTGGGCGAGGAAA CCGCCAAGGTCCTGGCCCGCTCGCTGGGCAGCCTGACGCGCGTGCAGCAGGCGCTGCCGCAGGTGCTGACCTATCTTCCGGACATCGGCCTGGAGGTAGC GTACGAGATCCACAACTTCTTCGAGGACGAGCACAACCGCACGGTCATCGAGCAGTTGCTGGCCTGCGGCATGCAGTTGCAGGACGAGGGCGAGCTGGCC GCCGAGTTTGCCGCCAGCACTACCCTGGCTGGCATGATCGCCAAGCTCGACATCCCCTCGGTCGGCCCGACGGGTGCGGAAAAACTGGTGGCCAAGCTCG ACAGCCTGGACAAGATCATTGCGGCTGACGGCATCGACTTGCGCCAGGCGCTGGCGGCCAAACAGGCCGAAGCGGTGCGCGATTTCTTCAAAGTCCCGGC GAACCAGCAGCTGGCCCGCGACATCGAGGCACAACTGCTGGCCTTCGGTATGCACTGGAGCAGCGAGAAGAAAGTTGCCGAAGGCCTGCCACTGGCCGGC CAGACCTGGGTGCTGACAGGGTCGCTGGAGCGCTTCAGCCGTGACATAGCCAAGGAAAAGCTGGAAGGCCTGGGCGCCAAGGTAGCCGGCTCGGTCTCCG GCAAGACCCACTGTGTGGTCGCAGGCCCTGGTGCCGGCTCCAAGCTGGCCAAGGCCAGTGAGCTTGGTGTGAAGGTGCTGGATGAGGAAGCCTTCGTCAC TTTCCTGGCAGGGCATGGCATCACTGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCTGCGCGGCCTTTGTAGGAGCGGCCTTGTGTCGCGAAAGGGGTGCGAAGCGCCCCCCTGTCAGTGCCGTGACTCGATTTTGCGGGGGCTGCTTTACAG CCCTTTCGCGACACAAGGCCGCTCCTATACGCGCCCCGTGCCAGCGCCCGATCACCCTGATTTCGGACAAGTCATTGAGAAATGATGACTTTTTCTCGCG CAGAGGTTGTATCTTGGCCCCAGACCGGTACAATGGCGCGGCTCGCTGCTTGGCGAGCCGCGTAGTGGTGGCCCCATCGGTCCCCCCGCATTGATTACCC GTTAACCTGGTCAGGCCCGGAAGGGAGCAGCCATAGCGGGAACATCGAGTGCCGGGGTGTGGCTGGTGGGGCCGCCTCCATTTCCGGGGTCGGAAAGTTG CATTCGGCCTGCGCATTACCTTTCCCATCTTGTGATCACTGGTTACAGCTGTCGCCTGATCCCGGTGCCGACAACGATCACGATCAACGAAAACCCCGCT
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| Amino Acid Sequence |
>NAD-dependent DNA ligase LigA
MNAETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQRVGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDG LDQPGAVDFSCEPKLDGLAVSLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGEGWPAVLEVRGEVYMSKAGFDRLNAAQAEAGGKTFANPRN AAAGSLRQLDSKITASRPLEFCCYGVGQVSESIGESHIGILEQLKQWGLPISRELRHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMDEIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPV EVPTECPVCGSQVERTQLVKRSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEDLIGSPADLYKLEFDQIVGLEGFAE VSSRKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLARSLGSLTRVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNRTVIEQLLACGMQLQDEGELA AEFAASTTLAGMIAKLDIPSVGPTGAEKLVAKLDSLDKIIAADGIDLRQALAAKQAEAVRDFFKVPANQQLARDIEAQLLAFGMHWSSEKKVAEGLPLAG QTWVLTGSLERFSRDIAKEKLEGLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEEAFVTFLAGHGITV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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