Pseudomonas syringae DSM 10604, PSSR_RS0116275
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig30, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGCGGCGACGATCAGGGCCAGGCGCAACTGAGCAAGGCTGTCGATGCGGCGGCGCAGTTGCTGGGCGTGCGTCTGGAGCAGTCCGGCCTGATAGTGCAT CGCGACTTCGTCGACGCCACGCTGACCATCGACCAGACCCGCCTGGAACAGATTCTGGTCAACCTGATCGGCAACGCACTGGACGCCATGTTCGACCTGC CGCAACCGGAATTATGGCTCACCAGGTCGGTTGTCGACGGCCGATACCGTCTGCGGGTACGTGATAACGGGCACGGCGTCGACGCCGAGGCGCGCAAGCA TCTGTTTGAACCTTTCTTCACCACCAAACCGGGCGAACAAGGCCTGGGGCTGGGCCTGACGCTGTCGGCGAGCCTTGCCGCCGCAGCCGGGGGCAGCCTG AGCGCAGAGCATCCGCAGGACGGCGGTACGACGTTTGTCCTGAGCCTGCCGTTCATCCCCGATGCCCGCCACCCGGACAGCCCGACATGAGACGACATCC
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| DNA Sequence for Gene |
>PSSR_RS0116275
ATGAGCATAAACAGCGACCTGACCGTCCTGATCGTCGAAGACGATCCGCATGTACTGCTCGGCTGCCAGCAGGCCCTCGCGCTGGAAGACATCGCCAGCG AGGGCGTTTCCAACGCTGAAGAGGCCTTGAAGCGCATCGGTGACAACTTCGCCGGTATCGTCATCAGTGACATTCGCTTACCGGGCATCGACGGGCTGGA GTTGCTGAGCCGTCTCAAGGCACGTGACAGCAGCCTGCCGGTGGTGCTGATCACTGGCCATGGCGACATCACCATGGCCGTCAACGCAATGCGCGATGGC GCCTACGACTTCATGGAGAAACCCTTTTCTCCCGAGCGCTTGGTAGACGTCACCCGGCGCGCACTGGAACAACGCGGGCTGGCCCGTGAAGTGTGGGCGT TGCGCAAGCAGCTGGCCGAGCGCGATTCGCTGGAAGGCCGGATCATCGGCCGCTCCCCGGCCATGCAAAACCTGCGTGCGTTGATTGCCAACGTCGCCGA CACCTCGGCCAACGTATTGATAGAAGGCGAAACCGGCACGGGCAAGGAGCTGGTCGCGCGCTGCCTGCACGATTTCAGTCGGCGCAAGGACAGCCAGTTC GTGGCGCTCAACTGTGGCGGGCTGGCGGAAAGCCTTTTCGAGTCGGAAATCTTCGGCCACGAAGCCAACGCCTTTACCGGCGCGGGCAAGCGGCGCATCG GCAAGATCGAACACGCGCACAACGGCACGCTGTTTCTCGATGAAGTGGAAAGCATGCCGGTCAATCTGCAGATCAAGCTGTTGCGCGTCCTGCAGGAGCG AACCCTCGAGCGGCTGGGTTCCAACCAGAGCGTCGCGGTGGATTGCCGGGTCATAGCGGCGACCAAGTCCGACTTGAATGCCTTGGGCAAGACCAATCAG TTCCGCAGCGACCTGTATTACCGCCTGAACGTCGTCACGCTCGAACTGCCACCCTTGCGTGAGCGCCGCGAAGACATTCTGCAGCTGTTTGAACACTTCC TGCAGTTGTCGTCGTTACGCTTCGACCGCGAACCGCCCGTGCTGGATCGGCAAACCAGCTCGAACCTGATGAGCCACGACTGGCCGGGCAATGTACGCGA ACTGCGCAACGTGGCCGAACGCTTTGCCTTGGGCCTGCCAGCATTCAAGCAGTCAGGCACGGTCAGTGAAAACCAGAGTCTTGGGTTTGCGGAAGCAGTC GAAGCCTTCGAGCGCTCATTGCTCGGCGACGCCTTGCAACGCAGCGGCGGCAACCTCAGCCAGGCCAGCCAGGAACTGGGCATGGCCAAGACCACGCTGT TTGACAAGGTCAAGAAATATGGGCTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACTGCGCCCGATCTTGAGGGTGCGGTGTAGCGCTGATCTGTGACGCAGACAACGCTGGAGCGCGAGGAATGATAGGCGTCCGCAAGACACCTATCGTG CCCATGCTCTGCGTGCTATCCCGCACAGACAGTACGTTACTTCGATTCACCGACAATCTGGCGGATTGCGCTGACGAATACCTCGACCGGCTGACCGCCC GAGACGGCGTACTGGTCGTTGAAGACCATGGTCGGCACGGAGGTGATACCGCGAGACGTCCAGAGCTGCTCTGCCTCGCGAACCTCAGTGGTGTACTCGT CGCCATCCAGAATCGCCTGAGCACGCAGACGATCCAGGCCGACCTTCTGCGCCACATCTGCCAGAGTCTGGTGACTGGACGGGTCTTTCAGGTCGCTGAA ATACGCCTCGAACAGCGCCTGCTTCAACGCATGCTGCTTGCCTTGCTGCTCGGCCCAGTGCAGCAGGCGATGGGCATCGAACGTGTTGTAGATACGCCGC
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| Amino Acid Sequence |
>helix-turn-helix, Fis-type
MSINSDLTVLIVEDDPHVLLGCQQALALEDIASEGVSNAEEALKRIGDNFAGIVISDIRLPGIDGLELLSRLKARDSSLPVVLITGHGDITMAVNAMRDG AYDFMEKPFSPERLVDVTRRALEQRGLAREVWALRKQLAERDSLEGRIIGRSPAMQNLRALIANVADTSANVLIEGETGTGKELVARCLHDFSRRKDSQF VALNCGGLAESLFESEIFGHEANAFTGAGKRRIGKIEHAHNGTLFLDEVESMPVNLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLNALGKTNQ FRSDLYYRLNVVTLELPPLRERREDILQLFEHFLQLSSLRFDREPPVLDRQTSSNLMSHDWPGNVRELRNVAERFALGLPAFKQSGTVSENQSLGFAEAV EAFERSLLGDALQRSGGNLSQASQELGMAKTTLFDKVKKYGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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