Pseudomonas syringae DSM 10604, PSSR_RS0106585
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae DSM 10604 Contig10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGGCTCTGGCCGACCTTGCCGGCCAGATCGCCGCGCTTGAGGATCAGCGAAACGGCTCCGCCGCTGAGGATATCCACAGTCCTGGCAGCACCGGCCAA TACACGGCTTTCACCGACGGTGACCACCAGCGTTGCGGTTTTCAAGGTTTCTGGGCTTACGCTTTTAACAACCAATTCCATGTGGGGTCCCCGAATAGAC GATGAGAGTCGCAATATGAATGTCGTACGCGGCATGGCCTGAGTGTTTTCAGGGGCGATGCCTGCGCTAAGCCTTGCAGTTTGACCCCGCTGCACGACTG CTGACAACCCCGCAGAGCTGCCTGTCTGGCGTCTATGTGCGAACTATCCCCGGTGCGCAGTGACAGAAACACACATTCACAGGATAATGCCGCATATTTT TTGAGGCCCACGCCTTTTTTCGGCGTGAAGCTCTGGTTGCCGTGGCTCACAAATTTTCCCTGTTTGGCTGCCTGAGCCTGACAACTCTGGAGTGTCTGGT
|
|
| DNA Sequence for Gene |
>PSSR_RS0106585
TTGATTGTCTTCCGTTATCTGTCCCGAGAAGTGCTGCTTACCTTGAGTGCGGTCAGCGCCGTACTGCTGGTCTTCATCATGAGCGGGCGCTTTATCAAGT ACCTGGCGCAGGCTGCGTCCGGTGCGCTCGATCCTGGCGTGCTGTTTCTGATCATGGGCTTCCGTCTGCCAGGCTTTCTGCAGGTGATTCTGCCGCTGGG CCTGTTCCTCGGCATCCTCATGGCGTACGGGCGGCTGTACCTGGAAAGCGAGATGACCGTGCTGGCCGCAACCGGCATGAGTCAGCAGCGTCTGCTGGCC ATCACCATGGGGCCGGCCACTCTTGTCGGGCTGCTGGTTGCCTGGTTGAGCTTCAGCCTGGCTCCGCAGGGCGCTACGCAGTTTTCGCTGCTGATCAATC AGCAGGACGCCATGACCGAGTTCGACACGCTGGTGCCGGGCCGTTTTCAGGCGTTGCGTGACGGTACGCGTATCACCTATACCAAGGAGCTGTCGGAAGA CCGCTCGCAACTGGCCGGTGTGTTTATCTCGGAAAAGCGCATGTCCAGCGACAAGAGCAAGGACAACGGCATCACCGTGCTGGTCGCGGAGAAGGGCCAT CAGGAGGTACGCCCCAATGGCAGTCGCTTCCTGATCCTCGAGAACGGCTATCGCTATGACGGCAATCCGGGGGCGGCCGACTATCGCGTGATCAAGTACG ACACCTATGGGGCGATGCTGCCCAAGCCGGAAATCAGTGAGGAAATCACCGACCGTGAAGCCATTCCGACCAGCGAACTGATCGGCAACCCGGCCCCGCG TTCAGTGGCCGAGCTGCAGTGGCGTATTTCGCTGCCGCTGTCGGTGTTCATCGTGACCTTGATGGCCATTCCGCTGTCACGGGTCAATCCGCGCCAGGGT CGTTATCTGAAACTGCTGCCGGCGATCCTGCTGTATATGTCGTACCTGGCCATTCTGATTTCGGTGCGCAGTTCGCTGGAGAAAGGCAAGTTGCCTCTCA GCCTGGGGATGTGGTGGGTGCATGCCATCTACCTGTCCATCGGCCTGCTGTTGTTCTATTGGGAGCCTCTGCGTCTGAAGATGGCGAGTCGTCGCAGCGT CACGGAGGTGACTCGTGGTCAAGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGATACATTGGCAAAAGCGTCCTGCTGGCGATTCTCGCCGTTCTGGGCATCATTCTGGGGCTGGTCTCGCTGTTCGCATTCATCGACGAGATGGGCGAT ATCAGCGACACCTACACGCTGGCGGATGCCCTCAGCTACGTCATGCTGACGGCGCCACGTCGCGTCTACGACACTTTGCCGATGGCCGCCCTGATCGGTT GCCTGATCGGTCTGGGCACGCTGGCCAGCAGCAGCGAGCTGACCATCATGCGAGCGGCGGGCGTGTCCATCGGGCGCATCGTCTGGGCGGTCATGAAGCC CATGCTGGTGCTGATGATCGCAGGCGTGCTGGTCGGCGAGTACGTTGCTCCCTATGCCGAGAACCAGGCTCAGGCTGCGCGATCGCTGGCTCAGGGCTCA GGTGATGCGCAGAGCGCCCGCCATGGTCTATGGCACCGCCAGGGCGATGAATTCATCCACATCAACACGGTGCAGCCCAATGGCCTGATGCTCGGTGTGA
|
|
| Amino Acid Sequence |
>permease
MIVFRYLSREVLLTLSAVSAVLLVFIMSGRFIKYLAQAASGALDPGVLFLIMGFRLPGFLQVILPLGLFLGILMAYGRLYLESEMTVLAATGMSQQRLLA ITMGPATLVGLLVAWLSFSLAPQGATQFSLLINQQDAMTEFDTLVPGRFQALRDGTRITYTKELSEDRSQLAGVFISEKRMSSDKSKDNGITVLVAEKGH QEVRPNGSRFLILENGYRYDGNPGAADYRVIKYDTYGAMLPKPEISEEITDREAIPTSELIGNPAPRSVAELQWRISLPLSVFIVTLMAIPLSRVNPRQG RYLKLLPAILLYMSYLAILISVRSSLEKGKLPLSLGMWWVHAIYLSIGLLLFYWEPLRLKMASRRSVTEVTRGQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|