Pseudomonas aeruginosa PA1R, PA1R_gp4566
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PA1R, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCGGCTGCTGTCGAAGGCTGGCCTAGCCGGCTCAGCCTTGTGGGTCGTGCAGCTGGCGAGCAGCAGGCACAGCGTGAGAGTGGTCAACTGCCTGGTCA TTGAGGCCCCCTTTGATGATGGGGCACACAGTGGCAGGCCATCCGCCATGCTTCAGCAGGAAATACTCGGCGGAGGGCCAGGGCTTTTTTATCCAGTTAG GCTTGCGGCTAAAAGCGCACGGTTTCCGTCAACCTGCTCTGGCTCGATGAGGTCCTGGGCTACCTGGCGTTTCGCGTTGAGCAGTTGCCACGAACTGTTC GTCGATCGTTCTCTCGACCAAGGGATCTTAGCCGCGACCATGCGTAGCTAGTCGCTGCTGTACGCGCGGTCTTCGTCCGGCCCCGTGATGAGCCCCAGAG AGAGATTTCCGGCCACGAGTGTTCCATCGCTTTTCGAATAGCGATTGCTTCATGAATTTATGTTATATCATTGCATTTTCAGAAGGAGGATGTACAGAAA
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| DNA Sequence for Gene |
>PA1R_gp4566
ATGGCATTACCTGTTGAAAATTGGAACGACACCACGGTAGTGGGATACCAGGATGGGAATGGGGGCTATGCATTTGACGGAGTAGGTGGAGGGTTCTCTG GAGGGTCCGACTCTCTAGGCCTTAATAGGCAGGAGCTCTCTCCTATGTCTCAGTCATTTGATGCATTTGAGGATAATGCAATTCAAGTTTACCAAAAACT CAGGGAGCATCTGGATAATCAATACAAGAGTGCCAAAGGCAATATAGATAAAGATGTTGATGAGAGGATTGAAGCAGCAATCAAAGCTGCTGGTGGTGAC TCTGTTCTCAGTCCACTCAGCAGGATTGATATCGCTATCTCCACAATACAAACACTTATAGCTCAGCGAAGTGAACAACTTCAGTCTGAGCGCCAACGGC TAGCCTCCCTTCCAGAGTCAAGCTATTCCGCGAGGAATGACTTGGACTTTGTTAAGATGCTCTATGACGCGGAGCCTGATAATCGTCAACTCTTCAAAAT GAGTCTTGAACCATTCGTGATTTCTGAAAGTGATGGTTTGGCGGTGGAGTACAATGCTGATGTATCCAGCCAATATATCGCTAACCTTCAGGGGCGCCTT CCTGAGTTAGAAAAAGCCCGAGTTCCATTGGTGGCTGAGGAAAAGGCTCGGCAAGAAGCAGAGGCGGAGGCACAGCGCAAAGCGGAAGAAGAGGCTCAGC GAGCTGCCGACGAAGCTGCTGCGCGCCAGGAAGCACAGCAGGTCACTCAGCAGCTTGGTGCCAATTTCAACGCAATCACTGCGCCGATGGGGGATAAGGT TCAGCAGCGCGTACAAGCAGCGGATGCGACGCAGGCTCAAATCTCCAATCAGATCGGAAGCGCAATTACATCTGCTACTCAGTCAGTACAGGCTAAAGCT GCCGAAGCGCAGCAGCATGCGAGTAGTTCCCTTGCTTCCGGCGATGGCTTGATTAGCTCTGCGTTTCGAGGTCAGATAGCCTCCGCCGCTCAGGCCATTG GTGAGTCCCGTGTTTCTGCTTTCAACACCCGCATCGATCAAATAGTCTCCGAAGCCACTTCATTTTCGGAGGCGAGAAAGCAGGCGTTGACCCAGTTCAC TGCAAATGCGGCTGCCGAAGTCGAAGCTGAGACTGCCAGGTTGGCGGAACAAGTTCGAGCCACCCCCACCCAAGCATCCTCTGAGTCAGCGCAGGCAGCT CTTCGTCAGTTCACGGAAAGTACCTATGCCAATGTGAACACTTTTGCCCAACAAACCGAAGCGGCACTACAAGCTAAGGCGCAAGAGGTTACGGCAGCCA TTGCCGAGGCACAGCGGGTAGCAAACGAAGGTTTGCAACAGGCAGCTGATGGTGTACAGGGAGAGATCACGCAGGCCGCTAACACCTTGGCGATGCCGGC GATTGCAGCGCCGTTGGTCTCCGTCGCTGGATTTGGCACCGCAGCACTTGAACTGGCCCAACTGGGCGCTTCGCTGGCTAACGCGGTAAACCGCGTAACT CAGGTTGTTACTGCTGGCCCCGGTGCATATGTTGCCACTTTCGCAGTGTTGACGCTGTACTCTGACCAAGCAGGAAAGGACAGTGATAAGGTGCCTGATG GTGTCCGCACCGCTTTAGCGCTGGAAGCATCCACTCTGGGCCTTTCTCCTGATCTGGATCTGCAAAGTGTTGCCGAGACCGGCGGTACTGTTGATATGCC TGTACGGCTAACTAGTCGTACCGAGGAAGATCTAGACAACAAGTCGCAGATAGCTGTTGTTGTCACTAATGCAGTTCCTATCCCCCAAGGTGTGCCCGTT CGTGCAGCTACCTTAAACCCCGCGACCGGGCGCTACGAAGTGACGGTGCCAGCTAAATCCACCGTACCTGATACGCCACCGCTGATCCTCACCTGGACGC CAGCCAATCCACCTGGAAGCCAGACTCCCTCAAGCACCACTCCGGTCGTGCCACAGCCGGTTCCGGTGTATGAAGGAGCAACGATTACCCCAGTGCAGGC CGAGCCGGAGTCCTATCCGGGAGTGCCGTTAGATCTGGACGATCTGATCGTGATCTTCCCGGCAGACGCGGGTATTCCGCCGCTCTATCTGGTTTTCTCT AAGCCTCCAGTTAGCGCACTGGAAGTAGACATCTATGGTAACTTTACGGGAAGGCCTCGTAATGGAAATCATCTTGATCATATGCCGGCTCAAGGGGCTT TGGCGACGAGTTTGAGATCAAATTTTCCGGGAATTCAAGATAAGAGAGTCCGGGAGTTGATGAGGAAAGGTGCTAGCATCGCTATTCCTGCGCGGATACA TCAGAAGTACAGCGAAACTTATGGTGGGCGCAATACCAAGGAAAAGCAGCGTAAGGATGCCGAAAATTTAAGAAGGGCCGTGGATAGTAATTTTGACGCA ATTAAAAATGCGTTGATAGAAGAAGGGTTCTCTGAGGAAGATGTTGAAGAGGCTCGTGCTAAATTGCATCGGATCAATGAAGAACAGGGGTGGTACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAATCCTGAATCAATTAAAGAACTTGTGGGTGCTCTTGGGCAAAGCTATAGTGAATTGATTGAAAGAAAGTTGATTCCATCTGGTCCTCTGGTGAAGCA GTATGAAGAATCTGACTGGCTTACTTTGGATGTTGATGTTGGTATTGAGCTGGAATTCTGGGCGGAAAGTAAGGTTGCGGAAAAAATTCATATAGTTCTT ATAAAAACCATGGAAAATATTCCGGCCTATCAAGGTGAGCTGCCGCCTCCCTTTTCTAGAAATATGGATAGAGCAGGTGTTCGTTCTGTTCTCGGTACTC CCGAGGAAACAAGAGAGCCATTTAAAATGCCTGTGATTGGATTGGTTGGAGGGTGGGATTTTTATGCTTACCCTGAGCGGCCTGAGATTAGAGTATTCTT CAGTTATACTGCCGAAATGAAAGTTGATACACTATCTTTTATCTTAAGAAATCCTGAGCATATCTAATTTGGTACCGGGCTTTCTGATGAGTGTAGGCAG
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| Amino Acid Sequence |
>pyocin protein
MALPVENWNDTTVVGYQDGNGGYAFDGVGGGFSGGSDSLGLNRQELSPMSQSFDAFEDNAIQVYQKLREHLDNQYKSAKGNIDKDVDERIEAAIKAAGGD SVLSPLSRIDIAISTIQTLIAQRSEQLQSERQRLASLPESSYSARNDLDFVKMLYDAEPDNRQLFKMSLEPFVISESDGLAVEYNADVSSQYIANLQGRL PELEKARVPLVAEEKARQEAEAEAQRKAEEEAQRAADEAAARQEAQQVTQQLGANFNAITAPMGDKVQQRVQAADATQAQISNQIGSAITSATQSVQAKA AEAQQHASSSLASGDGLISSAFRGQIASAAQAIGESRVSAFNTRIDQIVSEATSFSEARKQALTQFTANAAAEVEAETARLAEQVRATPTQASSESAQAA LRQFTESTYANVNTFAQQTEAALQAKAQEVTAAIAEAQRVANEGLQQAADGVQGEITQAANTLAMPAIAAPLVSVAGFGTAALELAQLGASLANAVNRVT QVVTAGPGAYVATFAVLTLYSDQAGKDSDKVPDGVRTALALEASTLGLSPDLDLQSVAETGGTVDMPVRLTSRTEEDLDNKSQIAVVVTNAVPIPQGVPV RAATLNPATGRYEVTVPAKSTVPDTPPLILTWTPANPPGSQTPSSTTPVVPQPVPVYEGATITPVQAEPESYPGVPLDLDDLIVIFPADAGIPPLYLVFS KPPVSALEVDIYGNFTGRPRNGNHLDHMPAQGALATSLRSNFPGIQDKRVRELMRKGASIAIPARIHQKYSETYGGRNTKEKQRKDAENLRRAVDSNFDA IKNALIEEGFSEEDVEEARAKLHRINEEQGWY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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