Strain | Pseudomonas aeruginosa PA1R, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
AGATCGATGCCGCCGCCTTGCGCGAAGGCTGGGCCGCGTTGAAGGACACCCATCATTTCCACGCCCTGCTGAAGAAGCATGGCGCGCAGCGCACCCAGGC GCTGCGCCTGGCTGGCGGCGAATGGGCCGAGCGCCTAGACAAGGGCGACCTGGCGAAACTCTTCGAAGCGGCGGCTGAAAGCGGATTGCCGATCATGGTG TTCGTCGGCAACGCCCACTGCATCCAGATCCATACCGGGCCTGTGTGCAACCTGAAGTGGCTGGACGACTGGTTCAACGTGCTCGATCCGGAATTCAACC TGCACCTGAAGACCACCGGCATCGCCGAGCTTTGGCGGGTGCGCAAGCCGAGCACCGATGGCATCGTAACCAGCTGGGAGGCCTTCGACGCCGACGGCGA ACTGATCGTGCAACTGTTCGGCGCACGCAAGCCCGGCGAGCCCGAGCGCGACGACTGGCGCGAACTGGCCGAATCCTTCAAGGCGCTCTGAGGAGAGATC
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DNA Sequence for Gene |
>PA1R_gp2624
ATGCGTATCGATCGACTATTCAACGGGTTGGCGCTGGGCATCCTGCTCGGCACCGGCATGGCCCAGGCCGCCGAGCTGCCGCAACGCTGGGTGAGCGCGG GCGGCTCGCTGAGCGAATGGGTGGTGGCGCTGGGCGGCGAGAGCAAGCTGGTCGGGGTGGACACCACCAGCCAGCATCCGCAGGCGCTGAAACAGTTGCC GAGCGTCGGCTACCAGCGCCAACTGGCTGCCGAGGGCGTGCTGGCGTTACGCCCGGATATCCTCATCGGCACCGAGGAAATGGGGCCTCCGCCGGTACTC AAGCAGCTCGAAGGCGCCGGCGTGCGGGTCGAGACCCTCTCCGCCAAGCCGGATCTGGAGGCACTGGAAAGCAATCTGAAGAAGCTCGGCGACTGGCTCG GCGTGCCCCAGCGCGCCGAGGCCGCCGAACTTGACTATCGTCAGCGGCTGCGGCGCCAGGCGGACTGGATCGCGGCCGCGCAGAAGAGTCAGCCGGCCCC GGGCGTCCTGCTGGTGATCGGCAACGCCGGCGGTCAGTTGCTGGTAGCCGGGCGCAATACCGGCGGCGATTGGGTCCTGAACCGAGCCGGAGCACGCAAC CTGGCTACCCATGAGGGTTACAAGCCGATCTCGGTGGAAGCCCTGGCAGCGCTCGATCCGGTCGCGGTGGTGATCGCCGACCGCAGCCTCGAAGGTGATG CGGCGCGTGCCGCGCTGCTCAAGCAGAACCCCGGGCTCGCCGCGACCCGCGCGGCGCGTGACGGACGTCTGCTGGTGCTGGACCCGACGCTCCTGGTGGG CGGCCTCGGTCCGCGCCTGCCGGATGGCCTGGCGGCTCTCTCCGCAGCCTTTTATCCTTCCGCGAAACCGCTGAGTACGGAAGCCGCCCATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AATCGGTTGTTCGTCCCCGCGCACTGTTCGGTGCGCTGGGGATTTCGCTCGTATTGGTCCTCTGGTTGTCCCTCGCCCTCGGTCCCGTCAGCCTGCCGCT GGGCGATACCCTGCGCGCCGCGCTGCGCCTGGCCGGGCTGCCGCTCGATGGAACGGGCCTGGCCCAGGCGGAAATGATCCTCGGCCAGATCCGCCTGCCG CGGACCCTGCTCGGCCTGGCCGTGGGCGCGGTGCTGGCGCTGTCCGGGGTGGCGATGCAGGGCCTGTTCCGCAACCCGCTGGCCGATCCAGGGCTGGTCG GGGTGTCCAGCGGCGCGGCCCTCGGCGCGGCGCTGGCCATCGTATTCGGCGCCTCGCTGGGTGGCTTGCCGGCGTTCCTCGCGCCCTACCTGCTGTCGCT GTGCGCCTTCGGCGGCGGCCTGGGGGTGACCTGGCTGGTCTATCGACTTGGCCGCCGCGATGGCCAGACCAGCGTGGCCACCATGTTGCTGGCAGGGATC
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Amino Acid Sequence |
>Periplasmic hemin-binding protein
MRIDRLFNGLALGILLGTGMAQAAELPQRWVSAGGSLSEWVVALGGESKLVGVDTTSQHPQALKQLPSVGYQRQLAAEGVLALRPDILIGTEEMGPPPVL KQLEGAGVRVETLSAKPDLEALESNLKKLGDWLGVPQRAEAAELDYRQRLRRQADWIAAAQKSQPAPGVLLVIGNAGGQLLVAGRNTGGDWVLNRAGARN LATHEGYKPISVEALAALDPVAVVIADRSLEGDAARAALLKQNPGLAATRAARDGRLLVLDPTLLVGGLGPRLPDGLAALSAAFYPSAKPLSTEAAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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