Pseudomonas monteilii SB3078, X969_21650

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00661
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pmon03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. IPR023554 ATP-dependent RNA helicase RhlB type 97 479 53.060768
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 315 485 2.0E-48
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 117 324 2.8E-52
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 173 462 4.53E-72
CDD cd18787 SF2_C_DEAD - - 321 449 1.39138E-58
MobiDBLite mobidb-lite consensus disorder prediction - - 1 90 -
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 332 441 2.6E-30
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 66 312 2.9E-75
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 73 481 2.1E-125
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 122 297 3.0E-48
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 360 441 4.3E-31
CDD cd00268 DEADc - - 109 310 1.0366E-94
MobiDBLite mobidb-lite consensus disorder prediction - - 65 82 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.