Strain | Pseudomonas monteilii SB3078, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
CGAATACCCACCATTCACTCACAAAGTACGCACAAGTTATCCACAGGCGCTCGCCTTGCAAAGCCCCCGATACCGCATTATCTTGTATCCCGATCGCAGC GAACCACTAGATATAGGGTTTCGTGCAAAATCACACACAAAAGTCAACCCGCAAAATCAGGCGATTTTTCGGGTGAACTTCAAGTGATTCCAGCAGCCAA ACCGCTCCTGCGGAGGGCGACCGAGGCAAGCCCCTCCAGGGCCTTGTTCGGGTATGGGTGTTGCAGGCCAGGCCTGACATCCATCAGCAACAGTTTTTGG GCCCGGCCCAGAACCTTTGACTTCGGCCAGGGAGCGGCGAGCCATTGCCCCTTATTCCTGAGTCTGTCCCGAAGTTGGTACGCCCGCGCGGGCGGATGCG CATGCATTGCCCATCCCCGCCAGGCCATCGAGCAAGTGGACGGAACGGTGGGCGCCCAAAAGGCGCCTGAACAATATAGAAACTGTGGAGACACCCACCC
|
|
DNA Sequence for Gene |
>X969_19750
ATGCAAACCGACACAACTCGCGAGAACCCGCAGGCCAAGGTGCCGCAGGCCGCCGATTCCAACCAGGATCTGGCCGCCACCGCTCCCGGCCAACTGCGCG TGATCAAGCGTAACGGCACTGTCGTCCCCTACACCGACGACAAGATCACCGTGGCCATCACCAAGGCGTTCCTCGCAGTTGAAGGCGGCACCGCCGCCGC TTCGTCGCGCATCCACGACACCGTCGCGCGCCTGACCGAGCAGGTCACCGCCACGTTCAAACGTCGCATGCCATCGGGTGGCACCATCCACATCGAAGAA ATCCAGGACCAGGTCGAACTGGCCCTGATGCGCGCCGGCGAGCAGAAGGTCGCCCGTGACTACGTGATCTACCGTGAGCAGCGCGCCAAGGAGCGTGCCA CCCGCGTCAACACCGAGTCCGTGGTCGAGCCGCACCCGAGCATTCGCATCACCCTGGCCGACGGCAGCCTGGCGCCGCTCGACATGGCCCGCCTGAACAC CATCATCAGCGAAGCCTGCGAAGGCCTGGCCGAAGTCGATGGCGACCTGATCCAGCGCGATACCCTGAAGAACCTGTACGACGGCGTGGCCATCAAGGAC GTCAACACTGCCCTGGTGATGACCGCCCGTACCCTGGTGGAGCGCGAGCCGAACTACTCGTTCGTGACCGCCCGCCTGCTGATGGACACCCTGCGTGCCG AAGGCCTGGGCTTCCTGAACGTGGCCGAGAGCGCCACCCACCACGAAATGGCCGACCTGTACGCCAAGGCCCTGCCGGCCTATGTCGAGAAAGGCGTCGA GTTCGAGCTGCTGGACCCGGCCCTGAAAGGCTACGACCTGGAGCGCCTGGGCAAGGCCATCGACCACGAGCGTGACCAGCAATTCACCTACCTGGGCCTG CAGACCCTGTACGACCGCTACTTCATCCACAAGGATGGCGTGCGCTTCGAGCTGCCACAGGTGTTCTTCATGCGTGTGGCCATGGGCCTGGCGCTGGAAG AGAAAGACAAAGAAGCCCGTGCCATCGAGTTCTACAACCTGTTGTCGTCCTTCGACTACATGGCCTCGACCCCGACCCTGTTCAACGCCGGCACCCTGCG CCCACAGCTGTCCAGCTGCTACCTGACCACCGTGCCGGACGACCTGTCGGGCATCTACCACGCGATCCACGACAACGCCATGCTGTCGAAATTCGCCGGT GGCCTGGGCAACGACTGGACCCCTGTGCGTGCACTGGGCTCCTACATCAAGGGCACCAACGGCAAATCCCAGGGCGTGGTTCCGTTCCTGAAAGTGGTCA ACGACACCGCCGTTGCCGTCAACCAGGGTGGCAAGCGCAAGGGCGCCGTGTGTGCCTACCTGGAAACCTGGCACCTGGACATCGAAGAATTCATCGAGCT GCGCAAGAACACCGGTGATGACCGTCGTCGTACCCACGACATGAACACCGCCAACTGGATCCCTGACCTGTTCATGAAGCGTGTCTTCGATGACGGCAAG TGGACCCTGTTCTCGCCTTCGGAAGTACCAGACCTGCACGACCTGACCGGCAAGGCCTTCGAAGAGCGCTACGAGTACTACGAAGCCCTGACCGAGTACA ACAAGATCAAGGTGTTCAAGACCATCCAGGCCAAAGACCTGTGGCGCAAGATGCTGTCGATGCTGTTCGAGACCGGCCACCCGTGGCTGACCTTCAAGGA CCCGTGCAACCTGCGTTCGCCGCAGCAGCACGTGGGCGTGGTCCACAGCTCGAACCTGTGCACCGAGATCACCCTGAACACCAACAAGGACGAGATCGCG GTCTGCAACCTGGGCTCGATCAACCTGCCGAACCACATCGTCGACGGCAAGCTGGATACCGCCAAGCTGCAACGCACCGTGAACACCGCCGTGCGCATGC TCGACAACGTGATCGACATCAACTACTACTCGGTGCCGCAAGCGCGTAACTCGAACTTCAAGCACCGCCCGGTCGGCCTGGGCATCATGGGCTTCCAGGA TGCGCTGTACCTGCAGCACATTCCGTACGGCTCCGATGCTGCCGTCGAGTTCGCCGACAAGTCGATGGAAGCGGTCAGCTTCTACGCCATCCAGGCGTCC TGCGACCTGGCCGACGAGCGCGGTGCGTACGAGACCTTCCAGGGTTCGCTGTGGTCCAAGGGCATCCTGCCGCTGGATTCGCAACAGATCCTGATCGAGG CCCGTGGCGCCAAGTACATCGACGTCAACCTGGAAGAGTCCCTGGACTGGGCCCCGGTGCGCGAGCGCGTCAAGAAAGGTATTCGTAACTCGAACATCAT GGCCATCGCGCCGACCGCGACCATCGCCAACATCACCGGCGTGTCGCAGTCCATCGAGCCGACCTACCAGAACCTGTACGTGAAATCGAACCTGTCGGGC GAGTTCACCGTGATCAACCCGTACCTGGTCCGCGACCTGAAGGCCCGTGGCCTGTGGGACTCGGTGATGATCAACGACCTGAAGTACTACGACGGTTCGG TGCAGCAGATCGAGCGTATCCCGCAAGAGCTGAAGGACCTGTACGCCACCGCGTTCGAAGTCGAGACCAAGTGGATCGTCGATGCCGCCTCGCGTCGCCA GAAGTGGATCGACCAGGCCCAGTCGCTGAACCTGTACATCGCCGGCGCCTCGGGCAAGAAGCTGGACGTGACCTACCGCATGGCCTGGTACCGTGGTCTG AAGACCACCTACTACCTCCGTGCACTGGCCGCGACCAGCACCGAGAAGTCGACCATCAACACCGGCAAGCTCAACGCCGTTTCCAGCGGTGGCGACAGCG CCCCGGTCCAGGCAGCCGGCCCTGCGCCAGTGCCGAAGGCCTGCGCGATCGACGAGCCTGACTGCGAAGCCTGCCAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GGCCAGGCCGAGGCTTCCTGCGGGAAGCCTCGATGCGTTTTCCGCATCACTGCGGACCCTGTGGGAGCGGGTTCACCCGCGATGAGGCCGGCACTCCCGC CGCCTCTCCACAGCCAGACACAACAAGCCGTGGCTGCAAAGCCGCGGCCAGCCCTTTTCGGGCACCTCAGATTTGCGTGCACCGCACCGCAACCAAGATC CACCGGCCATACTTGATAGATGGCCCTCAAGCAGGAGAATCTCACCATGCTGAGTTGGGACGAATTCGATAAAGAAGACGGCGAAGTAGCCGCCAAAGGC AACACCCCTGCGCAGGCCGCTGCTGCCGCCACCCTCGACAAGCTCGACAGCGCCGGTGGTGCCGCCGCCCTGGAAGCCCGTGCCGCCACCGCCGACGACT CCGACGCCGTCAAGCGCGCCAAGGCTGCCCTGAACGACCTCGACATCGCCGAAGGCCTGGCCGAGCTGGAAGGCTCCGGCGCCCGCGTGCGTGTTGACGA
|
|
Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit alpha
MQTDTTRENPQAKVPQAADSNQDLAATAPGQLRVIKRNGTVVPYTDDKITVAITKAFLAVEGGTAAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEE IQDQVELALMRAGEQKVARDYVIYREQRAKERATRVNTESVVEPHPSIRITLADGSLAPLDMARLNTIISEACEGLAEVDGDLIQRDTLKNLYDGVAIKD VNTALVMTARTLVEREPNYSFVTARLLMDTLRAEGLGFLNVAESATHHEMADLYAKALPAYVEKGVEFELLDPALKGYDLERLGKAIDHERDQQFTYLGL QTLYDRYFIHKDGVRFELPQVFFMRVAMGLALEEKDKEARAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYHAIHDNAMLSKFAG GLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFIELRKNTGDDRRRTHDMNTANWIPDLFMKRVFDDGK WTLFSPSEVPDLHDLTGKAFEERYEYYEALTEYNKIKVFKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIA VCNLGSINLPNHIVDGKLDTAKLQRTVNTAVRMLDNVIDINYYSVPQARNSNFKHRPVGLGIMGFQDALYLQHIPYGSDAAVEFADKSMEAVSFYAIQAS CDLADERGAYETFQGSLWSKGILPLDSQQILIEARGAKYIDVNLEESLDWAPVRERVKKGIRNSNIMAIAPTATIANITGVSQSIEPTYQNLYVKSNLSG EFTVINPYLVRDLKARGLWDSVMINDLKYYDGSVQQIERIPQELKDLYATAFEVETKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGL KTTYYLRALAATSTEKSTINTGKLNAVSSGGDSAPVQAAGPAPVPKACAIDEPDCEACQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|