Pseudomonas monteilii SB3078, X969_13605
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas monteilii SB3078, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TACCAGCTGACCGACCTCGAACGCTTCGCCGCGACCGATGCCGAGACCCTGTGGGACACCCCGGAAAAGGCCTTGGGCAACACCCTGGTGGAAGCCCGCG AGATCACCCTGCTGCCGGGCATCGGCCAGATCGACCAGTGGCCACTGGCCAAGAGCGCTCGCTACGTCGGCGTGGCAGCGTTCTTCCGCAACGAACAGGA CGCGCGCTGGAAGGTCGCCTTCGACGCCAACTCGCTGCGCAAGGACGGTATCTGGTTCTCTTCCGACGGCCTGCGGGTGCTGGTGGACAACACCGAAATC AGCGCCATGCGTGGCGTCGACGTACTGAACAAACCGCCGACCGCCGACCAGCTGGCAGCCGCGCAGAAGGCCCGGGACAACGCACCGACGCTCACCGACA AGGTGCAGGACGCCGTGCTCGACAAGGCCAGCGATGCCGCCGGCAAATCGGCACAGAACACCATGGATTCAACCTTCAACTCTTTAGTGGATAGCGTCAA
|
|
| DNA Sequence for Gene |
>X969_13605
ATGAGCAAGCAGAGCCGGGTGATGTGGTCGGAAGGCATGTTCCTGCTGCCCCAGCACTTCCAGTACCAGGATGAGTTCCACCAGCACCAGCTGGCCGAGG CGACCTTGCGCACCACCCCATTCCATTGGGGTGTGCAGGTACTGCAGGTGGATGAGGACGCCCTGGCCAACGGTTCGCTGCAGCTCAAGCGACTCAAGCT GGTGTTCCCTGACGGCAGCCTTTACGACGCACCGCAGCACGACCCGTTGCCGGCTGCCCGCGACCTCAAGGACCTGCTCAAGGCCAACGACCTCAAGGTT CATGCTGCCTTGAAGCTGCCCGAGCCATTCGGCCTGAACTATGTCGAGGATGGCCAGGAACACAAGGCCGCGCGGCGTTTCCGCAAGCAGTTCGATACCC TGCCCGACCTCAATGAAGGCGAGCTGGAAAACGAAATCACCAGCCTGCGCCTGAACGTGGTGCTGCTGGTGGACGGTGACAGCCTGGACGGCTACAGCCA CTGCCCGCTGGCCAGGCTGACCCGCAACAGCATGGGCGGTTTCAATCTCGACCCGCATTTCGTCCACCCCACTCTGCATCTGGGCAGCCACGAGACCCTG GCCGGCATCGGCAAGCGCCTGCTCGGCGCCCTGCAGGCCAAGAGCAAGGCCCTGTCCGGCCGACGCCGCGAACGCGCCGACCAGATCGCCGAGTTCGGCT CCAGCGACGTAACCCTGTTCTGGCTGCTGAACACCGTCAACCGCGCCCACCCGCAGCTGGCCCATCTGCTGGCGCACCCGCGCCTGCACCCCGAGCGCCT GTACCTGTTCCTTGCCGACCTGGCGGGTGGCCTGCTGACGTTCACCCTGGACACCCAGCTCAGCGACATCCCCGAATACGACCATCACGACCCGGCCGCG TCGCTGGTCAAGCTCGACGAGATGATCCGGGTGATGCTCGACAACGTGGTGCCCAACCAGTGCATCGTCATCAACCTCAACCAGACCAAGCCGTCGTACT GGCAGGGCCAGTTGCACGATCCACGCCTGACCGAGGCCGACTTCTATATCTCGGTCCATGCCGACATGCCTGGTGCCAGCCTGCTGGAGCTGGTACCGCG GGCATTCAAGGTCGGCTCGCCGGAAGACATCGAGGTGGTGGTCAACAGCGCGATGCCCGGCGTCACGCTCAACCATGCCGCACGGCTGCCCAACGCAATT CCGGTGCGCCTGGACAACCAGTACTTCGCCATCGAGCCGCATGGCCATGTCTACGAGCGAATGATGAATGCCCAGACCATCTGCTTCTACGCGCCCAGCG CCTTTACCAACCTCAAGCTTGAACTGATGGCGGTGCTCAAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCGAAGCCGTATTGCAACAGGGCGCCGTCGCGGCCGCCAACGACAAACCGACGCTCAAGGACCTGGTCCAGGACTTCATCAGCATGGCCCTGATCGTGCG ACGTGGTCGTCAGGTCACCTCGGTGCCGGCCTTCGAAGCCAGCGTGGAACGCTTCTTCGCCAACCTGGAACGCGACGCCCGCGCAGCCAACTACAGCGCC GAACAGGTCAAGGACACCCAGTACGCGCTGTGTGCCTTCCTCGACGAGAGCGTGCTGCGCGCGAGCGACAACCAGCTGCGCCAGCACTTCGAGCTGCAGC CGCTGCAGTTCCGCTACTTCGGCGTGCACCTGGCGGGTGAAGGCTTCTTCGAGAAGGTCGATGCGCTGCGTGCCGACGTCAAGCAGAACATCGATGTACT CGAGGTCTACCACCTGTGCCTGGCCTTGGGCTTCGAGGGCAAGTTCAGCCTCGGCCAGAAAGACCAGCTGCGCTACCTGGCCAATACCCTGGGCCAGGAT
|
|
| Amino Acid Sequence |
>type VI secretion protein
MSKQSRVMWSEGMFLLPQHFQYQDEFHQHQLAEATLRTTPFHWGVQVLQVDEDALANGSLQLKRLKLVFPDGSLYDAPQHDPLPAARDLKDLLKANDLKV HAALKLPEPFGLNYVEDGQEHKAARRFRKQFDTLPDLNEGELENEITSLRLNVVLLVDGDSLDGYSHCPLARLTRNSMGGFNLDPHFVHPTLHLGSHETL AGIGKRLLGALQAKSKALSGRRRERADQIAEFGSSDVTLFWLLNTVNRAHPQLAHLLAHPRLHPERLYLFLADLAGGLLTFTLDTQLSDIPEYDHHDPAA SLVKLDEMIRVMLDNVVPNQCIVINLNQTKPSYWQGQLHDPRLTEADFYISVHADMPGASLLELVPRAFKVGSPEDIEVVVNSAMPGVTLNHAARLPNAI PVRLDNQYFAIEPHGHVYERMMNAQTICFYAPSAFTNLKLELMAVLK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|