Pseudomonas sp. TKP, U771_31150
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. TKP, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTGGAGATCTTCCCGCCAGCCTTGCTCGGCCGCCTGGTGACCATTCCTTACTACCCGCTCAGCGATGAGATGCTCAAGGCGATCACCCGCCTGCAACT CAACCGCATCAAGAAGCGTGTGGAAAATACGCACAAGGTCGCCTTCGACTACGACGACGCGGTGGTCGACCTGATCGTCTCGCGCTGCACCGAAACCGAA AGCGGCGGGCGCATGATCGACACCATCCTCACCAACAGCCTGCTGCCCGACATGAGCCGTGAATTCCTCACGCGCATGCTTGAGGGCAAGGCGCTGGCGG GTGTGCGCATCAGCAGCCGGGATAATGAGCTGCACTACCAGTTCAACGATTGATCTGACGGAATACAGCTCAACATGTGGGAGGGGGCTTGCCCCCGATG GCGGTGAATCAGTCACCAATGCATCACCTGACACACTGCTATCGGGGGCAAGCCCCCTCCCACATTTGGACTGGGTTCCTTCAGTTATTAGGGTACTTCG
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| DNA Sequence for Gene |
>U771_31150
ATGCTATTCAACCAAGCCTCACGCCTGGCCAAGATCACCAGCCCCCTCGGGCCGGATGTGCTGCTGCTCAATGAAATGGGCGGCGGCGAAGAGCTGGGGC GCCTGTTCACCTACGAGCTGCAACTGACGTCCCTGGACGCCAACATCGACCTCAACCAGTTGCTCGGCAAGCCGATGAGCGTGGGCCTGCAACTGGCGGA CGGTGGCGAACGGCATTTCCACGGCATCGTCGCGCAGTGCAGCCAGAGCATCGACCAGGGCCAGTTCGCCAGCTACCAGGTGACGCTACGCCCATGGCTG TGGCTGCTCAGCCGTACGTCCGATTGCCGGATTTTCCAGAACCTGAGCATCCCGCAGATCATCAAGCAGGTGTTCCGTGACCTGGGCTTTTCCGACTTCG AAGACGCCCTGAGCCGGCCGTATCGCGAGTGGGAATACTGCGTGCAGTACCGCGAGACCAGTTTCGATTTCGTCAGCCGCCTGATGGAACAGGAAGGCAT CTACTACTTCTTCCGCCATGAGCAGGACCGCCATGTGCTGGTGCTGGCCGATGCCTATGGCGCCCACACCACGGTGCCGGGCTACGCGTCGATCCCCTAC TACCCCAAGGACGAGCAGCAACGCGAACGCGACCACATGCACAACTGGCACCTGGCGCAGCAAGTGCAGCCGGGCTCGCTGGAGCTCAACGACTACGACT TCCAGCGCCCCAGCGCGAGCATCGACGTGCGCTCGGCCATGCCGCGCCCGCACACCGCGGGCGACTACCCGCTGTACGACTACCCCGGCACCTACGTGCA AAGCGCAGACGGCGAACACTACGCACGTACCCGCATCGAAGCCCTGCAAACCCTGCATGAGCAGATCGAGTTCAGCGGCAACGCCCGCGGCCTGGGCTCG GGCCACCTGTTCAGCCTCACCGGCTTCAGCCGCCAGGACCAGAACCGCGAATACCTGATCGTCGGCTGCCGTTACTACATCGTCCAGGAAAGCCTGGAAA GCGGCGGCGGTTCAGGCGCGGCGCAGTTCGAAAGCAGCCTGACCTGCATCGACGCCCAGCAAAGCTTCCGCCCACTGGCGAGCACCCACCGCCCGATCGT CAAAGGCCCTCAGACCGCGCTGGTGGTGGGCCCCAAAGGCGAGGAAATCTGGACCGACCAGTACGGCCGCGTGAAGGTGCACTTCTACTGGGACCGTCAC GACCAATCCAACGAAAACAGCTCGTGCTGGATACGCGTCTCGCAATCCTGGGCCGGCAAGAACTGGGGCTCGATGCAGATTCCACGCATCGGCCAGGAAG TGATTGTGAGCTTTCTGGAAGGTGATCCCGACCGGCCGATCATCACCGGGCGGGTGTACAACGCGGAGCAGACGGTGCCCTACGACCTGCCGGAAAATGC GACCCAGAGCGGCATGAAGAGCCGCTCGAGCAAGGGCGGCACGCCGGCCAATTTCAATGAAATCCGCATGGAGGACAAGAAGGGGTTGGAGCAGTTGTAC ATCCATGCCGAGCGTAACCAGGACATCGTCGTCGAAGTGGACGAAAGTCACTCGGTGGGGCATGACCGCAACAAGAGCATCGGGCACAACGAGACGGTGA CCATCGGCAACAACCGCCTGCGCATCGTCAAGCAGGAAGACATCCTCTCGGTGGGCCAGAGGAAGACCGACAGCATCAGCCAGAGCTACGTCATCGAAGT CGGTGAAAACCTGCGCCTGGTCTGCGGTGAAAGCATCCTGGAGCTCAACGCCAGCGGGCAGATCAACCTGACTGGCGTGCAAATCAGTTTCTACGCCAGT GGCGATGCCGAGTTCAATACCGGCGGCGTGCTGCACCTGAACAACGGCGGCGGCCCCGGCGCCACGCCCGATGGCCAGGGCCAGAAAGGCGCCATCGACG CCAATATCAAAGCCGCGTTTCCCGCGCCTAAAAGTTCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGAGACCTGTTTTCCATGACGTACCGAATCAACGAATTCCAGTTTCAACTGCCCGCCAGTGAGTTGCAGGACGCGACGATCAACATCCTCAAGTTCCCCG AACTGGGCACCTCCCTGATCGTCAGCCGCAGCCTGCTCGCCGAGGGCGAAACCCTGCACAGCAACTTCAACGACCAGCTCCAGCGCCTGGAAAAACAGGT GCAGGACTTGCGCTATCAACCGGGTGTGGATGTGCGCCTGGGCGCCGCGCAAGAGGTCGAAGGCATCGAGCTGCGCAGCCAGTTCAACAAGGGCAATGAC AAGGTGTTTCAGTATCAGTTGGCCCTGGTGATACCGGGCACACGCAAGATGCTCGCGTTGAGTTATGTGAAGGCGGACAAGCTGGGTGATGCCGAGGCGG CGCATTGGGCATTGATCAAAAACTCGCTGTCGTTCGACGCGATTTCTTGATGAGCTACCTGCATGTCTGACGCGTTATGGGCGGCCCGGATGGGCGATGC
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MLFNQASRLAKITSPLGPDVLLLNEMGGGEELGRLFTYELQLTSLDANIDLNQLLGKPMSVGLQLADGGERHFHGIVAQCSQSIDQGQFASYQVTLRPWL WLLSRTSDCRIFQNLSIPQIIKQVFRDLGFSDFEDALSRPYREWEYCVQYRETSFDFVSRLMEQEGIYYFFRHEQDRHVLVLADAYGAHTTVPGYASIPY YPKDEQQRERDHMHNWHLAQQVQPGSLELNDYDFQRPSASIDVRSAMPRPHTAGDYPLYDYPGTYVQSADGEHYARTRIEALQTLHEQIEFSGNARGLGS GHLFSLTGFSRQDQNREYLIVGCRYYIVQESLESGGGSGAAQFESSLTCIDAQQSFRPLASTHRPIVKGPQTALVVGPKGEEIWTDQYGRVKVHFYWDRH DQSNENSSCWIRVSQSWAGKNWGSMQIPRIGQEVIVSFLEGDPDRPIITGRVYNAEQTVPYDLPENATQSGMKSRSSKGGTPANFNEIRMEDKKGLEQLY IHAERNQDIVVEVDESHSVGHDRNKSIGHNETVTIGNNRLRIVKQEDILSVGQRKTDSISQSYVIEVGENLRLVCGESILELNASGQINLTGVQISFYAS GDAEFNTGGVLHLNNGGGPGATPDGQGQKGAIDANIKAAFPAPKSS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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