Pseudomonas sp. TKP, U771_31110
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. TKP, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TATCCGAGCTGCGGCCGATAGCCATCGAGCCCTGGTTCATGGACTTTTCGGAGCACTGCCCCGGGGTAATCTTGTGATAACTAGTGATAGTCAAACACAG CGACATCTTGCCTCCTTGCTGATACTTCGCGCGCAGTCGATCCAAGGGACAGCGATTCCCGAGAGATCCCCATCAGGTCGTGCAATCGACCTTCCACAAC CTGCTTTTGTCAGCATGATCGCTGATCTTAACTGGCCTTCATGACAAAAATCCTGTTCCGGTGCGTCGTTCGACCCACCAGTCGCGCAGGTTGTTAAACA CCGCACATCTGTCACAGAGCGCGAATAGCTTACCTTGACAAGGCATAAGTACTACACCAAAAATGCACAACTTCTTGAATACCAGTGATGGCACATTAGT GGCATCTTACTTATATGACCAAGAAAACATGCAAAGTTCCTCGCGCAACTAATGCATGAATTGCCCGCCATTTAACGGGCTGATAGGGAGATCGATTTCA
|
|
| DNA Sequence for Gene |
>U771_31110
GTGGATGTGCCGTTGCTGCTCACCGCCGTTTCCGCGACTTCGCCGTGTGGTGAAGACATGGAATATGACGCGCAATTTTTGCAATTGGAGCGTGATGCCA AGGGCCAACCCGAGCGCAGCATGGGCGACTCGATCCTGCCCGCTGAACCGCCGGAGTGGCGCAGCATCCAGCAGCAAAGCCTTGACTTGCTGCAACGCAG CAAAGACCTGCGCATCACCCATTTCCTGCTGCAAAGCTCCCTCGCCCTGCAAGGCGTGGCCGGGCTGGCTGAAGTCCTCACGCTGATCAACGCGCTGCTG CGCGAATACTGGGCCGACCTGCACCCGCACCTGGATGCCGACGACGATAACGACCCCACCGTGCGCATCAACGCCCTGTCTGGCCTGACCAGCGACGCGA CCATTCGTCTGTTGCGCGAAAGCATCCTCACGCGCTCGCGCACCTTCGGCCCCGTGAGCCTGCGCGCTGCGCTCAGCGCCAGCGGCCTGATGAATTTCCC CGATGAACAACTCGGCGCCCAGCAACTCAACGCCGCGTTCCTCGACAGCGATCCCGAACAACTGCAGGCCACCCGTGACGCCTTGAGCACGGCGCGCGCC GCTTGCGAAGCCATCGAGCAGCAGGTCAGCGACCAGGTCGGTTCAGCCCAGGGCGTGGACCTCAGCCTGCTGAAGCAGCCGCTCAAGCAGGCGTTGCAAA TACTCAACCAAGCCGTACCCGACCCTACAAGCAGCCGCGAACCCGAGGCCGTCAGTGACGACAATGCCCCCTCGGTCGATTTCGCCGCTGCCCCCGCCGC ACCTCGCCCCACTGGCGACATCGCCAACCGCGACGACGTGCTGCGCAGCCTCGACAAGATCCTTGCGTACTACACCCGGCACGAGCCTTCGAGCCCGCTG CCGGTGTTGTTGAACCGGGCCAAACATCTGGTGCACGCCGACTTCGCGGCCATCGTGCGCAACCTGATTCCCGATGGCATGTCCCAATTTGAAAACCTGC GCGGCCCGGACGGCGAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACCGCCCGGCTGTGCAGTAACAACACCGTCGCTCAAGCGACCAGGAGCAGCAACGTGGCGAAGCAAAGTTCTCAGAAATTCATCGCGCGCAACCGCGCGC CTCGAGTGCAGATCGAGTACGACGTCGAGCTCTACGGCGCCGAGAAAAAGGTCCAGCTGCCCTTCGTGATGGGTGTGATGGCCGACCTCGCCGGCAAGCC TGCCGAGCCTCTGGCGCCTGTGGCCGACCGCAAGTTCCTTGAAGTGGATGTCGATAACTTCGACTCGCGCCTCAAGGCCATGCAGCCACGCGTGGCGTTC CACGTACCCAACGAGCTGACCGGTGAAGGCAACCTGAGCCTGGATATCACCTTCGAAAGCATGGACGACTTCAGCCCGGCCGCCGTGGCCCGCAAGGTCG ACTCGCTCAAGCAACTGCTCGAAGCCCGCACCCAACTGGCCAACCTGCTGACCTACATGGACGGCAAGACTGGCGCTGAAGAAATCATCATGAAGGCGAT
|
|
| Amino Acid Sequence |
>type VI secretion protein ImpA
MDVPLLLTAVSATSPCGEDMEYDAQFLQLERDAKGQPERSMGDSILPAEPPEWRSIQQQSLDLLQRSKDLRITHFLLQSSLALQGVAGLAEVLTLINALL REYWADLHPHLDADDDNDPTVRINALSGLTSDATIRLLRESILTRSRTFGPVSLRAALSASGLMNFPDEQLGAQQLNAAFLDSDPEQLQATRDALSTARA ACEAIEQQVSDQVGSAQGVDLSLLKQPLKQALQILNQAVPDPTSSREPEAVSDDNAPSVDFAAAPAAPRPTGDIANRDDVLRSLDKILAYYTRHEPSSPL PVLLNRAKHLVHADFAAIVRNLIPDGMSQFENLRGPDGE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|