Pseudomonas sp. TKP, U771_19440

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. TKP, complete genome. [Details]
DNA Sequence Upstream of Gene
CGACTATTACCTGTTCGATGACCTCGTCCAGGGCAGCGCCACCCAGTCGCTGGACAGCGCCACCCGGTACCTGGAGCGCCTGGAAATCGCGCACAAGGTC AGCGTCAAGGACGGCGTATTCAGCACCACCGACCTGTCCACCGGCCAGCGCAAGCGCCTGGCGCTGGTCAACGCCTGGCTCGAAGAACGCCCCGTGCTGG TGTTCGACGAATGGGCCGCCGACCAGGACCCGGCCTTCCGACGCATCTTCTACACCGAGCTGCTGCCGGACCTCAAACGCCTGGGCAAAACCATCATTGT GATCAGCCACGACGACCGTTACTTCGATATCGCCGACCAGTTGGTGCGCCTGCGCGCGGGCCAGGTGGTGCATGAAATGGCACCGGCGTGAAATTTTTTT CCGGTTTCTCCAGTTAGGAACGTCTCACTAGTGGTAATGAGAACCAGACTCAATAAATACTTATAAACTGCCCACTTCACACACAGAAGAGAAAGCATTC
DNA Sequence for Gene
>U771_19440
ATGTCAGTACGACTCGGTCTGAGCCCCCTGAGCAAAGCGCTATCCATGCGACGGGCCCTGAACTTCAACCTTACGCCCTGCGCGCTCGCGATTGCGGTAT CGCTGCCCATCGCCGGGTATGTACAGGCCCAGGAGCTCGAGATCGATATTCCTGCACAGCCGTTGGGGACGGCGTTGCAGGAATTTGGCCGCCAGACCAA TCTGCAAGTGCTGTACAGCCCGACCGATGTGCAAGGCAAGAACAGCACTGCGGTCAAGGGCAAGCAAGCACCCGACAAGGCGATCGCCTCGCTGCTCAAC GGCACGGGTGTCCACTACAGCCTGCAAGGCAACGCCGTGACCATCAGTGCAGCCGCGACTTCGGGGCTGGAACTGGGGGCTACGCAAGTCACCGCTAACC AGTTGGGCACCGTGACGGAAGGCACCGGCTCGTATACCCCTGGCACTATTGCCACGGCGACACGCATGGTGCTGACGCCTCGCGAAACGCCGCAGTCGAT CTCGGTGGTGACGCGCCAGGTGATGGATGATTTCGGGCTTAACGCCATCGATGACGTCATGCGCCATACCCCGGGCATCACCGTGTCGACCTACGACACC GAGCGCACCAACTACTATTCCCGTGGCTTCTCTATCGTCAACTTCCAGTACGACGGCATCCCGACCCTGCGTGACGCCCAATACTCAGCGGGCCAGACCC TGACCGACATGGCGATCTACGACCGTGTCGAGGTCCTCAAGGGCGCCACCGGCCTGCTCACCGGCGCTGGCGGCCCAGGGGGCACCATCAACCTGATCCG CAAAAAACCGACTTCCGAGTTCAAGAGCAGCATCGAACTGGGCGCCGGATCCTGGGACAACTACCGCTCCCAGGTCGACGTCAGCGGTCCCCTGACCGAA ACCGGCAATGTGCGTGGCCGTGCCGTCGCGGCGTATCAGGACAAACAATCGTTCCTTGACCACTACTCGCGCAAGACCGGTGTGCTCTACGGCATCCTCG AATTCGACCTGGACGAAAACACCCTGTTGACCCTCGGCGCCGACTACCAGGACAGCGATCCGAAAGGCTCCAGCTGGACCGGCACACGGACCATCTTTGA TGCAACGGGAAACAAGCTGAACCTGCCGCGTTCGTTCAACAACGGCCCGAAATGGGGTTCATGGGAGCAATACAGTCGTACCGCTTTCGCGACCCTGGAA CACACCTTTGACAATGGCTGGGTCACCAAAGGCCAATACAACCACCAGATCAACGGCTATAACGCGCCTCTGGGCTACATCTCCCAGGACTCCGCCACCG CCAGCTCCATCTACGCACGCAAATACGTGGGCGACACCACCAGTGACAGCCTCGATGTGTACGCCTCGGGGCCATTCGAGCTGTTCGGCCGCGAACACGA ACTGGTGATCGGCCAGTCCCTGTCCATTTCCAAATGGAAAGCCAAGGACTACACCGCGACCACTTACTTCAACAACTCCTATGACTTCTACAATTGGAAT GGCCAAGCCATCGAGCCGCTGTGGACCGCCACCAAGATCAATGACGAAACCACCCGCCAGACCGGTACCTACGTCACGGGCCGCTTCAGCCTGACGGACG AGCTGCACCTGTTGCTCGGCTCGCGTATCGCCAACTACCAGGTCACCGGTACCAGCGACACCCAGGAAAGCGGCAAGGTGGTGCCGTATGCGGGCCTGAC GTATGACCTGAACGACAATTTCACCGCGTATGCCAGCTACACCGAAATCTTCCAGCCCCAAACCCAGTACCGCACCCGCACACGCGCCATGCTTGCCCCC AACGAGGGCAAGAACTATGAGCTTGGCGTCAAGGGTGAATTCTTTGGCGGCCGTTTGAATTCCAGCCTCGCCTACTTCGAAGTGCACGAAGAAAACCGCC CGCTGGCCGACACGGCGTGGAACTCCCAGCCGGGCGTCGACTATTCGTACATCGGCACCAAGACCAAGACCAAGGGCTACGAAGCGGAAATCTCCGGCGA ATTGGCCCAGGGCTGGCAACTGCAAGCGGGCTACACCCACAAGATCGCCCGCGATGACGATGGCAAGAAGGTCGCGACCTGGGAGCCGGAAGACCAAGTC AGTTTCTATACCACCTATAAACTCCAGGGCAACCTGGACAGGCTCACCGTCGGTGGCGGCGCGCGCTGGCAGAGCGCTGGCTGGCAGACCGTCAACAACT GGGGCTACCCCGGTGGTGGCCGCTCCGAGAAATTCACCCAAGACCCGTACTGGCTGGTTGATTTGATGACCCGTTACCAAGTGACCGATAACCTTTCGGC CACCCTCAACGTCAACAACCTGTTCGACAAGCACTACTACACCAACATCGGTTTCTATGACTCGGCTTACCCTGGCGACCCACGCAACGTGATGCTCACC ACGCGCTGGGACTTCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCCGCAACCCGCAAAGCCCCTGGTCACTCCGTGGCCAGGGGCTTTTTTGTGCCCGCTGCGCAAGCCTGGATGAACACGCGGTATCAGACAGCAAAACGC CCCTGGCCATCGCTGGCCAGGGGCGCCCTTTACAGCAACCGCTTACTCCATCGCTGCCACAAAGCTGCTGATGAACTCAGCGTTATCCACGATCCGGTGG TGAGTCGTATCGATCACCACCGAACGCCGGATACCCGCCTGGCCAATCACCTCGCGCATACCGGACTCGATCAACGCCTGGTGGATACCGCCCTCACTCA GGGCCGCCCACCAGCAATTGACCGGCGCCCGGATGGCGCGGTAATCGGTGTCTTGCAGGCGCTCATCCAGCACCTGCTTGAGCGCCCAGGAGCGCTCGGT TTCGCCGCCCGACAGCAACTCATCCTTGAGCACGCGGAAGCTATCGCCCAGGGTCCGCTCAGCCCAATCGGACACCTGCTGCCATTGCTCATCCTGGCTG
Amino Acid Sequence
>ligand-gated channel
MSVRLGLSPLSKALSMRRALNFNLTPCALAIAVSLPIAGYVQAQELEIDIPAQPLGTALQEFGRQTNLQVLYSPTDVQGKNSTAVKGKQAPDKAIASLLN GTGVHYSLQGNAVTISAAATSGLELGATQVTANQLGTVTEGTGSYTPGTIATATRMVLTPRETPQSISVVTRQVMDDFGLNAIDDVMRHTPGITVSTYDT ERTNYYSRGFSIVNFQYDGIPTLRDAQYSAGQTLTDMAIYDRVEVLKGATGLLTGAGGPGGTINLIRKKPTSEFKSSIELGAGSWDNYRSQVDVSGPLTE TGNVRGRAVAAYQDKQSFLDHYSRKTGVLYGILEFDLDENTLLTLGADYQDSDPKGSSWTGTRTIFDATGNKLNLPRSFNNGPKWGSWEQYSRTAFATLE HTFDNGWVTKGQYNHQINGYNAPLGYISQDSATASSIYARKYVGDTTSDSLDVYASGPFELFGREHELVIGQSLSISKWKAKDYTATTYFNNSYDFYNWN GQAIEPLWTATKINDETTRQTGTYVTGRFSLTDELHLLLGSRIANYQVTGTSDTQESGKVVPYAGLTYDLNDNFTAYASYTEIFQPQTQYRTRTRAMLAP NEGKNYELGVKGEFFGGRLNSSLAYFEVHEENRPLADTAWNSQPGVDYSYIGTKTKTKGYEAEISGELAQGWQLQAGYTHKIARDDDGKKVATWEPEDQV SFYTTYKLQGNLDRLTVGGGARWQSAGWQTVNNWGYPGGGRSEKFTQDPYWLVDLMTRYQVTDNLSATLNVNNLFDKHYYTNIGFYDSAYPGDPRNVMLT TRWDF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site