Pseudomonas sp. TKP, U771_01025
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. TKP, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCGCCTTTTGTAGGAGCGAGCTTGCTCGCGAAAAACGTCAACGATAACGCGTGTCTCCTGAATGAACGCGGCGCCTGTGAGTTTTTCGCGAGCAAGAACT AGGCGTCCCCCTCGCTCCTACAAAAAAGCCTTAACTGAGCGGCATTAGGGCTTGCCCACTCCCACACGGGTGTCTCACCCTGCGGATCCCGACAAATGGG ATCCAATTCACAAAACCCCCGCGAACTTTTCGATCTTTTCCGGTACTAACCTAACTCGACGCCAACTTGATGGCCAATTAGTGGCCGTTATTAAGTTGTG CTCGAATAACTATCAAAAGAGTTGCCGTTTGTCGGAATAATAGTTCCGACGATAGATCGCTCATCTTTTTGACAATTTTTTATTGTTATTAATCAAGCGG TTGCAGGATTAATTAGCCAAAGTATTCGACTAAGCCAGTTTCTTGGATCAGTCGACGCTCGATGTTAGTTTGCGGCCCCTTGATTTTCGACGGATCGAAC
|
|
| DNA Sequence for Gene |
>U771_01025
ATGTCTCTGTTATTGCCACGGACTCGGTTATTGCTGTGTACTTTCCTGCTCACTTACTTGAGCCTGAACAGTGCCACTGCCGCCCCCACGCCTGGGGATC AGGACCTGATCCGTGACCGGCAAAGCCGTCTTCTCGAAGAGCAGCGCCGCCGCCTCGAAGAGCTGCAGGATCTGCCGGGTAAGGGCACCCGGCCCCAGGC CCCGGCCACGCCCGCGGACACGCGTTGCTTCCCGATCAAAACCATCGAACTCAAAGGCGCCGACAGCCTGTCAGCCGCCGATCGCGCGCGCCTGCTCAAG CCCTATATCGGCCAGTGCCTGGGCGTCGCGCAGCTCAATGAACTGCTCAAGGCCATCACCGATGACTACATCGGCAAAGGCCGCGTCACCAGCCGCGCCT ACCTGCCACAACAGGACCTTTCCAGCGGCCACCTCCAAGTACTGGTGGTGGAAGGCAAACTCGAAGGCTTGAAGGGCGCCGAAGGCAGCACGGTCACCGA CCGCGAGCTGGCCATGGCGTTTCCGGGCAAGGTCGGCGAGTCGCTCAACCTGCGTGAAGTCGAACAACTGGTCGACCAGTTGAGCCGCTTGCCGTCCAAG CAGGCGCAAATGGAACTGACCCCCGGCACCCAGATCGGTGGCAGCGAAGTGCTGGTCAAGAACCAGCCGCAAAAGCCCTGGCGCGCCAGCCTGTCGCGCA ACAACGACGGCCAGAAAAGCACCGGCGAACAGCAGTGGGGCGCGGGCCTGGAATGGGACAGCCCGCTGGGCCTGGCCGATCAACTGATCCTGCGCGGCGG CCACGATGCCCTCAGCGACCACCAGAAAACCTCGAAAAACAGCATGCTCTACTACAACGTGCCGTGGGGCTGGTGGAACTTCAGTTACACCTACAGCGAG AGCGACTACCGCACCCTGGCCGACCTCGATGGCTACAAGCTCAAGCAGTACGGCGACAGCCAGAACCACCAACTGCGGGCCGAGCGCGTGATCCATCGTG ACGACGTGAGCAAGACGTCGGTCAACGTCGGTCTTGCCCATTTGCGCACCAACAACTACCTGCTCGATGCGCGACTGGACACCAGCAGCAACCGCCTCAG CGAATTCCAGGTGGGGATCAACCACGGGCGCCGTATCGGCAGTGCCTTCGTCAACGTGGACCTGGGCATGCAAAACGGTATCGGCGCGTTCGATGCGCAG AGCAACGACCAGGAACGCGATCGCGAGGGCAACCTCACGCCCACGCCGAACTACCGCAAATACACCGCCACCGTCAGCTACCTGCAGCCGTTCACGCTGT GGGGCGAGTCGTTCAGTTTTTCCAGCCTGGCCACCGGGCAGCGCAGTGAAGACGTGCTGTTCAGCCCGCAGCGCATCAGCCTCGGCGGGTCGGCGTCGGT CCGCGGTTTCAAGGACCAGCAATTGACCGGCGACAGCGGCGGTTACTGGCGCAATGACGTGCGCTGGGCGCGCCCGGTGACTTGGGACTGGATGCGCCCG GCGTTCCTGGAGTACGGCGCCAGCGTCGGCTACGACCAGGGTGTGATCCGCAATGATCGCTACAACGACAACCTCCATGGGCGCGTTTCGAGCAACTCCC TCGAGCTGTTCGCCCGCGGCAAAAACGTCAGCACCAGCGTGACCTTTGCCCACTCCCTGGAACGACCGACGGTGATGAGCGAGCGTGAAGCGCCGATCTA TTTCCGCCTGGATTTCTACCTGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTCAATGCCCGCAACCTTGAGATTTTGAATATGGACGTTCGCCCCGTTTCTGCCCTGAAAAGCCTGAGCCAACGCGGCCTGGCGCTGATCCTGGCCAACG CGCTGTTCTGGCAGCCGCTGCTGGCCCAGGCCGACGGCATCGTGGTCAGTGGCCCGGGCACCACGCTCGGCCAGGCGGGCAACGGCGTACCGGTGGTGAA CATTGCCACGCCCAATGGCAGTGGCCTGTCCCATAACCAATTCAAGGACTACAACGTCGGCCCCAACGGCGTGATCCTCAACAACGCCAGCGGCGCGCTG CAAAACACGCAACTGGGCGGGATCATCGTCGGCAACCCGAACCTCAAGGGCGGCGCGGCGAATGTCATCCTCAACGAAGTCAAAGGCGGTAGCCCCAGCC AGTTGCGCGGCTACACCGAAGTGGCGGGCCAGTCGGCCAAGGTCATCGTCGCCAACCCCTACGGCATCAGCTGCAACGGTTGCGGGTTCATCAACACCCC
|
|
| Amino Acid Sequence |
>ShlB family hemolysin secretion/activation protein
MSLLLPRTRLLLCTFLLTYLSLNSATAAPTPGDQDLIRDRQSRLLEEQRRRLEELQDLPGKGTRPQAPATPADTRCFPIKTIELKGADSLSAADRARLLK PYIGQCLGVAQLNELLKAITDDYIGKGRVTSRAYLPQQDLSSGHLQVLVVEGKLEGLKGAEGSTVTDRELAMAFPGKVGESLNLREVEQLVDQLSRLPSK QAQMELTPGTQIGGSEVLVKNQPQKPWRASLSRNNDGQKSTGEQQWGAGLEWDSPLGLADQLILRGGHDALSDHQKTSKNSMLYYNVPWGWWNFSYTYSE SDYRTLADLDGYKLKQYGDSQNHQLRAERVIHRDDVSKTSVNVGLAHLRTNNYLLDARLDTSSNRLSEFQVGINHGRRIGSAFVNVDLGMQNGIGAFDAQ SNDQERDREGNLTPTPNYRKYTATVSYLQPFTLWGESFSFSSLATGQRSEDVLFSPQRISLGGSASVRGFKDQQLTGDSGGYWRNDVRWARPVTWDWMRP AFLEYGASVGYDQGVIRNDRYNDNLHGRVSSNSLELFARGKNVSTSVTFAHSLERPTVMSEREAPIYFRLDFYL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|