Pseudomonas aeruginosa SCV20265, SCV20265_5324
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa SCV20265, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGATGATGATGCGGTATGCACATCTGTCGCCGGAGCACTTGGAATCGGCGATGCGCTTTTCTCCGATTACTCAGTCTGGCTACAAATTGACCACATGAGG ATCTGTGGTAATCTGTAGTGAAGTTAACGCTTAACGTTAAGGGTTAATGAATGATTCTGACCTTTCGCTGCGACGAGACTCGTCAGCTTTTTGAGACGGG TCTTTCGAGGCGGTGGGGAGCGATCCTCACAGTCGCTACGCGTAAGCTCGCAATGCTTCATGCGGCTACGGAGCTTCGAGACCTGCGCTCTCCACCTGGA AACCGGTTGGAGCCGTTGCAGGGAAAGCGGGCGGGCCAACATAGCATCAGGATCAATGACCAGTGGCGTGTCTGTTTCGTCTGGACGGATGCGGGTCCCG AAGAAGTCGAAATAGTTGATTACCACTGAGGAGGTGGACCATGGCTACCAATGGTATGCGCCCCATCCATCCTGGGGAAATATTGCGCGATGAGTTTCTG
|
|
| DNA Sequence for Gene |
>SCV20265_5324
ATGGAGTTTGATATCTCTCCAGCTGCTCTAGCACGCGCTTTGAAAGTCTCCGCTCCGACAATGAACGATATCGTTCGTGAGCAGCGTGGTATCTCCGCAG ATATGGCGATTCGTCTGGGGCGTTACTTTGATACGTCCGCTCAGTTCTGGATGAATCTCCAGAGTGAGTATTCGTTAGCAACTGCTTATGCGGCGAATGG CAAGCAGATCGAACATGAGATTGAGCCGCTGCTTGCTCACGGATAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGGTGACGTTGATCGTAGAGCCCCGCAGATGCGGGGCTTTTTCATGCGAACCGTAAATCGGTAAAGGGGGCGTAGACGGTTTGTAGTCGGTTTGTAGTCT GCCGACCAAAACAAAAAGGGGTTAGCTTGCGCTAACCCCTTGAAAAATATGGTGGCTACACCGGGACTTGAACCTGGGACATCAGCATTATGAATCGCAT GAGAGGCGCCCCGTGCTACCCCGAAGCCTGGGAGTCCGGGCGTTTCAATAGGTGTTAAGGCCTCATTTCACCCTGTTATTTCTGGTAATTCGTCTTATGT AGACACCTTAGACTATTTACGGCTATAACCTATCGCGCTAACCTCGCCTGTGCCCATGTGCTATAGAAAATGTGCTGCTGGGAGGGCCCATGGGATTGGG TTGTCACGAGTGGATGCGTAGCTCGCGTCAGAGAGAATATCGTCCGAAAATTTGGGCTTTCTGCACTTGTTCTTTATTTCTGTAGTGCTTGTCATTGCTC
|
|
| Amino Acid Sequence |
>HigA protein (antitoxin to HigB)
MEFDISPAALARALKVSAPTMNDIVREQRGISADMAIRLGRYFDTSAQFWMNLQSEYSLATAYAANGKQIEHEIEPLLAHG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|