Pseudomonas aeruginosa SCV20265, SCV20265_3967

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00962	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04539	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00962	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00962	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00962	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00962	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	paes02020	Two-component system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	paes02025	Biofilm formation - Pseudomonas aeruginosa	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Hamap	MF_00962	RNA polymerase sigma factor FliA [fliA].	IPR028617	RNA polymerase sigma factor FliA	1	236	67.680824
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	155	236	1.35E-20
Pfam	PF04545	Sigma-70, region 4	IPR007630	RNA polymerase sigma-70 region 4	182	231	5.5E-19
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	203	218	2.1E-11
PIRSF	PIRSF000770	SigK_SigE	IPR000943	RNA polymerase sigma-70	1	238	1.7E-35
SUPERFAMILY	SSF88946	Sigma2 domain of RNA polymerase sigma factors	IPR013325	RNA polymerase sigma factor, region 2	3	86	5.1E-26
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	41	54	2.1E-11
Gene3D	G3DSA:1.10.1740.10	-	-	-	1	83	8.2E-26
Gene3D	G3DSA:1.20.140.160	-	-	-	85	235	9.4E-44
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	218	229	2.1E-11
Pfam	PF04539	Sigma-70 region 3	IPR007624	RNA polymerase sigma-70 region 3	95	158	2.9E-9
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	14	86	4.7E-20
NCBIfam	TIGR02479	JCVI: FliA/WhiG family RNA polymerase sigma factor	IPR012845	RNA polymerase sigma factor, FliA/WhiG	14	233	4.6E-82
NCBIfam	TIGR02937	JCVI: sigma-70 family RNA polymerase sigma factor	IPR014284	RNA polymerase sigma-70 like domain	11	233	1.1E-33
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	186	198	2.1E-11
FunFam	G3DSA:1.10.1740.10:FF:000002	RNA polymerase sigma factor FliA	-	-	1	83	1.7E-40
CDD	cd06171	Sigma70_r4	-	-	176	230	3.42634E-13
PANTHER	PTHR30385	SIGMA FACTOR F FLAGELLAR	-	-	6	237	4.0E-50
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	88	155	9.16E-13
FunFam	G3DSA:1.20.140.160:FF:000001	RNA polymerase sigma factor FliA	-	-	85	235	2.2E-71

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.