Pseudomonas aeruginosa MTB-1, U769_05550

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003724 RNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00661
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG paem03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 369 478 7.9E-30
PANTHER PTHR47959 ATP-DEPENDENT RNA HELICASE RHLE-RELATED - - 132 518 4.4E-124
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 352 518 6.4E-48
MobiDBLite mobidb-lite consensus disorder prediction - - 56 118 -
CDD cd18787 SF2_C_DEAD - - 358 486 2.4537E-58
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 210 494 1.97E-72
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 103 349 2.1E-74
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 159 334 3.1E-48
MobiDBLite mobidb-lite consensus disorder prediction - - 28 118 -
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 397 478 2.0E-32
CDD cd00268 DEADc - - 146 347 1.33776E-92
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 154 361 4.8E-52
Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. IPR023554 ATP-dependent RNA helicase RhlB type 134 516 53.172462

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.