Strain | Pseudomonas putida H8234, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
GGTGATCCTGGAAACCCTGACCGCGCTGGGCACCCAGCAGATCATGGCCCAGGCCTACCTGCCGGCGATCAAGGACGGCGACAAACGCATCCTGATGATT GATGGCGAGCCGGTGGACTACTGCCTGGCGCGTATTCCGGCCAGCGGCGAAACCCGTGGCAACCTGGCCGCTGGCGGGCGTGGCGAAGCGCGCCCGCTGA CCGAGCGCGACCGCTGGATTGCCGCCCAGGTCGGCCCGACCCTGCGCGAGAAGGGCCTGTTGTTCGTGGGCCTGGACGTGATCGGCGACTACCTCACCGA AATCAACGTCACCAGCCCCACCTGCATCCGCGAGATCGATGCTGCCTACAACACCGATATCGGTGGCAAATTGATGGATGCCATTGATCGCAAGCTCAAG GCGCGCTGACAGCCAACGCGAAGCTAAACCGCAGAGTGGGGTATGATGCCGGTCCTATTCGACTGAGCTGCTGCCCCGCCCTGCAGTTGCTGGATACCTG
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DNA Sequence for Gene |
>L483_30125
ATGACGCTGCCCGCTGACATCCCCTCCGACCTGCTGCCGCCCCGTGTTCGCCCGGTGGACCGGCTCGGCTTTACCCTGTTCCTGGCTGCCCTGGTGCACC TGGCGCTGATTCTTGGCGTCGGCTTTACCGTGGTCAAGCCTGCCGAAATCCGCCACACCATGGACATCACCCTGGCCACCTTCAAGAGCGAGAAAGCGCC CGAGAAGGCCGATTTCCAGGCTCAGGAAAACCAGCAGGGCAGCGGCACGCTGGACAAGAAAGCGGTGCCCACCACCACCGAACTGGCGCCGTTCCAGGAC AGCAAGATCAACAAGATCACCCCGCCACCCGCCGCCAGGCCCGAGGTGGTACCCCCCCCTACCCCACAAAAGTCGGCGGTAGTGACGACTGCGCCCAAGC CGCAGAAGGTCGAACCCAAGCCCAAGGAAAGCAAGGCACAGCCCAAGCCGGCGGCGCCCGCGCCAGACTTCGACAGCTCCCAGCTGTCCAGCCAGATCGC CAGCCTGGAGGCGGAGCTGTCCAACGAACAGCAGATGTACGCCAAGCGCCCGCGCATCCACCGCCTGAACGCCGCCTCGACCATGCGCGACAAGGGCGCC TGGTACAAGGAAGAGTGGCGCAAGAAGGTCGAACGGGTGGGCAACCTGAACTACCCCGACGAAGCACGTCGGCAACAGATCTACGGCAACTTGCGCATGA TGGTGTCGATCAACCGCGATGGATCGCTGTACGAAGTGCTGGTACTGGAATCGTCCGGGCAGCAGGTGCTGGACCAGGCAGCGCAACGCATCGTGCGGCT GGCAGCGCCGTTTGCACCGTTCACCGGGGATTTGGCCGAGTTTGACCGGCTGGAGATCATCCGCACCTGGCGCTTTGCCCGGGGGGACCGTTTGTCCAGC AACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CTCAGGGCCTCGGTGTAGGGCTCGCTATATGCGGTGGCGCTCGATCTCATAAGCGCCAAAAACCTCAAGACAGCCGCCAACCAAGCGACACAAATCCGCA CCTTGTCAGCCTCGCCGCCTGGCGCCACACTATCCCCATGAAAACCCTCGCCCCGAGCTATCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCC GATCCGAACTTCGCCCAGACCCTCACGTACATTGTCGAGCACAATGAACATGGCGCCATGGGCCTGGTGGTCAACCGGCCGCAGGAACTGAGCCTGGCCG ACATCCTCGAGCAGCTGCGCCCGGACGAAACGCCGCCGGCCAGCACCCTGCAGGTGCCGATCTACCAGGGCGGCCCGGTGCAGACCGATCGCGGCTTCGT GCTGCACAGCAGCGAATGCAGCTTCCAGGCCACCGTGGCCCTGGAAGGGCTGTCACTGAGCACATCGCAGGATGTGTTGCTTGCGATTGCCGCAGGGGTA
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Amino Acid Sequence |
>cell envelope biogenesis protein TonB
MTLPADIPSDLLPPRVRPVDRLGFTLFLAALVHLALILGVGFTVVKPAEIRHTMDITLATFKSEKAPEKADFQAQENQQGSGTLDKKAVPTTTELAPFQD SKINKITPPPAARPEVVPPPTPQKSAVVTTAPKPQKVEPKPKESKAQPKPAAPAPDFDSSQLSSQIASLEAELSNEQQMYAKRPRIHRLNAASTMRDKGA WYKEEWRKKVERVGNLNYPDEARRQQIYGNLRMMVSINRDGSLYEVLVLESSGQQVLDQAAQRIVRLAAPFAPFTGDLAEFDRLEIIRTWRFARGDRLSS N
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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