Pseudomonas putida H8234, L483_01645
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida H8234, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCCCGGGCGCCCAAGGCGGCCCGCTGATGCACGTGATTGCCGCCAAGGCCGTGTGCTTCAAGGAAGCGCTGGAGCCTGGCTTCAAGGCCTACCAGCAACA AGTGATCGAAAACGCCCAGGCCATGGCCCAGGTGTTCATCGACCGCGGCTACGACGTGGTGTCCGGTGGCACCGACAACCACCTGTTCCTGGTCAGCCTG ATCCGCCAGGGCCTCACTGGCAAAGATGCCGACGCCGCCCTGGGCCGCGCGCACATCACCGTCAACAAGAACGCCGTGCCGAACGACCCACAGTCGCCGT TCGTCACCTCGGGCCTGCGCATCGGTACCCCGGCCGTCACCACCCGCGGCTTCAAGGTTGCGCAGTGCGTGGCCCTGGCCGGCTGGATCTGCGACATCCT CGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCGCTGTGCGCAGACTTCCCTGTTTACCGCTGAGTGGAGTAAACGACC
|
|
| DNA Sequence for Gene |
>L483_01645
ATGCAACGCTACTCGGGCTTCGGCCTCTTCAAACACTCCCTCAGCCACCACGAAAACTGGCAGCGCATGTGGCGCACGCCCACCCCTAAAAAGGTGTACG ACGTGGTTATCGTCGGCGGTGGCGGCCATGGTTTGGCCACGGCCTACTACCTGGCCAAAGAGCACGGCATCACCAACGTTGCCGTGATCGAGAAAGGTTA CCTGGGCGGCGGCAACACCGCCCGTAACACCACCATCGTGCGTTCCAACTACCTGTGGGATGAGTCGGCGCAGTTGTACGAGCACGCCATGAAGCTGTGG GAAGGCCTGTCCCAGGACATCAACTACAACGTGATGTTCTCCCAGCGCGGCGTCTACAACCTGTGCCACACCTTGCAGGACATTCGTGACTCCGAGCGCC GCGTCAGCGCCAACCGCCTCAACGGCGTCGATGGCGAGCTGCTGAACACCGCCCAGGTCGCGGCCGAAATCCCGTACCTGGATTGCTCGAAGAACACCCG CTACCCGATCCTTGGCGCAACCGTTCAGCGCCGTGGTGGCGTGGCCCGCCACGACGCCGTGGCCTGGGGCTATGCCCGCGCTGCCGACGCCCTGGGTGTG GACCTGATCCAGCAGACCGAAGTGATCGGTTTCCGCAAGGAAAACGGCGCGGTCATTGGTGTGGAAACCAACAAAGGCTTCATCGGCGCCAAACGCGTCG GCGTGGTCACCGCCGGTAACTCCGGGCACATGGCCAAGCTGGCCGGCTTCCGCCTGCCGCTGGAATCGCACCCGCTGCAAGCGCTGGTATCCGAGCCGAT CAAGCCGATCATCGACAGCGTGATCATGTCCAATGCCGTGCACGGCTACATCAGCCAGTCCGACAAGGGCGACCTGGTAATCGGTGCCGGTATCGACGGC TGGGTCGGCTACGGCCAGCGCGGCTCGTACCCGGTGATCGAGCACACCCTGCAGGCCATCGTCGAGATGTTCCCCAACCTCTCGCGCGTGCGCATGAACC GCCAGTGGGGCGGCATCGTCGACACCTCGCCGGACGCCTGCCCGATCATCACCAAGACCCCGGTCAAGAACATGTTCTTCAACTGCGGTTGGGGTACTGG CGGCTTCAAGGCGACCCCGGGTTCGGGCAACGTCTTTGCCGCGAGCCTGGCCAAGGGCGAAATGCACCCGCTGGCCGCGCCGTTCTCCATGGACCGTTTC TACAACGGCGCACTGATCGACGAACACGGCGCCGCCGCCGTCGCCCACTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCGGAGACACCGTCATGTTGCATATTTTCTGTCCCCACTGCGGCGAGCTGCGCTCCGAAGAAGAGTTTCACGCCTCTGGCCAGGCGCACATCGCCCGCCC GCTGGACCCTGCCGCTTGCTCCGACGAGGAGTGGGGTACCTACATGTTCTACCGTGACAACCCACGCGGTATTCACCATGAACTGTGGGACCACGTTGCC GGTTGCCGCCAGTACTTCAACGTCACCCGCGACACCGTGACCTACGAAATTCTGGAAACCTACAAGATTGGCGAAAAGCCGCAAGTGACCGCCAACGGTA AAGCTGCGAACGCACCGTCGACCGTCAAAGGCCAAGGGGAAAAAGTATGAGCCAGACCTATCGCCTCGCCAGCGGCGGCCGCATCGACCGCAGCAAGGTC CTGAACTTCACTTTCAACGGCAAGACCTACCAGGGTTATGCCGGTGACAGCCTGGCCGCTGCGTTGCTGGCCAACGGCGTAGACATCGTCGGCCGCAGCT
|
|
| Amino Acid Sequence |
>sarcosine oxidase subunit beta
MQRYSGFGLFKHSLSHHENWQRMWRTPTPKKVYDVVIVGGGGHGLATAYYLAKEHGITNVAVIEKGYLGGGNTARNTTIVRSNYLWDESAQLYEHAMKLW EGLSQDINYNVMFSQRGVYNLCHTLQDIRDSERRVSANRLNGVDGELLNTAQVAAEIPYLDCSKNTRYPILGATVQRRGGVARHDAVAWGYARAADALGV DLIQQTEVIGFRKENGAVIGVETNKGFIGAKRVGVVTAGNSGHMAKLAGFRLPLESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDG WVGYGQRGSYPVIEHTLQAIVEMFPNLSRVRMNRQWGGIVDTSPDACPIITKTPVKNMFFNCGWGTGGFKATPGSGNVFAASLAKGEMHPLAAPFSMDRF YNGALIDEHGAAAVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|