Pseudomonas aeruginosa CF18, Q002_04221
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa CF18 genomic scaffold adgfD-supercont1.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGATCCGGCGCGGCAGCATTCCTTCATCGTCACCGAGGAACTGGCGCCGACCGTGGACCTCGAGGTGTTCTCCCAGGACTGGCGCGAACGTCCTCCAC CGCCGCGGCTCAAGCGCGCGCTGGTCGAGGCGGTGGCGCGGATGGTCGGCGACATGCACCGTGCCGGAGTCAACCATCGCGACTGCTACATCTGTCATTT CCTGTTGCACACCGACAAGCCGGTGAGCGCGGACGATTTCCGCCTCTCGGTGATCGATCTGCACCGTGCCCAGACCCGCGACGCCACGCCGAAACGCTGG CGTAACAAGGATCTGGCGGCATTGTATTTCTCTGCGCTGGACATCGGACTGACGCGTCGCGACAAGCTACGCTTCCTGCGCACCTATTTCCGCCGGCCGT TGCGCGAGATACTGCGCGACGAGGCCGGCCTGCTGGCCTGGATGGAACGCAAGGCGGAAAAACTCTACGAACGCAAGCAGCGTTACGGAGACCTGCTCTG
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| DNA Sequence for Gene |
>Q002_04221
ATGGCGGGGTGGACCCTCGAACCCGATTACCGTCACCTGGCCGCCGACTTCGGTAGCCTCGATAGCGTGTTCGCCCTGGAGGGCGAGCGCCTGACCCGCG ACCCGTTGTCCGAAGTCATCCGCATCGAGCGCGACGGCGTGCGTTACTACGTCAAGCGCTACCGCAGCGCCGGCAAGGGCCTGCGCCGCTACCTGGCGCG ACCGCGGATCAAGGCCGAGTGGCAGAACCTCAAGCGCTTCGAGAAGTGGGGCATTCCCACCGCCGAAGTGGTCGCCTGGGGGCTGGAGCGCAAGGCCGGC GCCTTCCAGCGCGGCGCCATGATCACCCGCGAGCTGCCGGGCACCGAGGACTTGTCGGTGCTCGCCTGCAACCGGGATCCGCGCCTGAAGGACCCGCGCT GGGTGGACGGCGTCAGCCGGCAGATCGCCAAGGCTACGCGCCTGATGCATGACCAGCATTTCACCCATAACGACCTGAAGTGGCGCAACCTGCTGGTGGA CGACCAGCCGCTGGTGTATTTCATCGACTGCCCGAACGGCGCGTTCTGGTGGAGCTTCATGCTGCGCTACCGGATCACCAAGGACCTGGCCTGCCTGGAC AAGGTGGCCAAGTACCACCTGTCGCGCACCCAGCGCCTGCGCTTCTACCTGCAATATCGCCGTCGCCGGCACCTGAACGAATCCGACAAGAAGCGTATTC GCCAGGTGGTGGCTTTCTTCGAGGGGCGCGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTTTTCATCGCCGCGCAGGACCACGACCTGCTCCAGCGCAACCGTCTGGACAGCTTCGACGCCCTGTGGGCCTTGCAGCTGGACGCCGTGGACGAACC GAATACCGAGCGGGGTGGCTGGAGCAGCGTCTACCGCCTCGACCTGGGCGACTCCGCCTACTACCTGAAGCGCCAGAGCAACCACCTGACCCGCAGCCTG CGCCATCCGCTGGGCGAGCCGACCTTCGCCCGCGAGTTCCGCAACATCGAGCGCTACCGGGCGCTGGGCATTCCCGCCCTGCAGGCGGCGTTCTTCGCCC AGCAGGCGGTCGGCGGAGAGCGCCAGGCGATCCTCCTGACCCGTGCCCTGGACGGTTGGCAGGACCTGGACACCTGGCTGGCGTCCTGGCACGACCTGGC CGAAGAGCGGCGCCGGGCGATTCTCCGGGCGGTTGGCAGGCTGGCGCGCCAGCTGCACGCCGCCGGACAGATGCATGGTTGCTTCTATCCCAAGCATGTA
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| Amino Acid Sequence |
>putative lipopolysaccharide core biosynthesis protein
MAGWTLEPDYRHLAADFGSLDSVFALEGERLTRDPLSEVIRIERDGVRYYVKRYRSAGKGLRRYLARPRIKAEWQNLKRFEKWGIPTAEVVAWGLERKAG AFQRGAMITRELPGTEDLSVLACNRDPRLKDPRWVDGVSRQIAKATRLMHDQHFTHNDLKWRNLLVDDQPLVYFIDCPNGAFWWSFMLRYRITKDLACLD KVAKYHLSRTQRLRFYLQYRRRRHLNESDKKRIRQVVAFFEGRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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