Strain | Pseudomonas aeruginosa CF27 genomic scaffold adgfH-supercont1.2, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCTGGCCCTGGGCGGCGAGCCGCTGGTGGTGGCCGTGCCCAACGGCGATCCGCTGGCGCGGCAAGAGCGGATCGACCTGTACGATCTGCGTGATCGGCCG CTGATCCTGTTTCCACTGGACTACGGCTCCGGCCTCAACGAACTGATCGAGCGCCTCTACCGGAAGGCCGGGCTGGCGCTGACGAGGGGACCGGCCGGAC GCCAGATCACCTCGATCATCGCCCTGGTCGCGGCCGGCCAGGGCGTTGCCCTGGTGCCACGTTGCAGCACCGCGCTGGCCCGGGCCGGAGTCGTCTATCG CCCGCTGGCCGAGCCCGAGGCGCTGGCCGATTTCCTCGTCTTCACCCGCCGCCATGGCCGCAGCGCCGCGGTGGAGGCGTTCCTCGCCATCCTAGGTGGC CTGGACGCAGGCGAAACACCCCGACACATTTAGTCGCGCGGGTTCGCAAGCGAGATTTCTTATCATTCGTGCCTACGTTCCGCTGACGAGGCTGTTCTTC
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DNA Sequence for Gene |
>Q003_05586
ATGCAGGCAAGCAAGGCTCTACTCGCCGCCCTGGCCCTGGGCATCACCGGCCTGGCCCAGGCCGCCGACGAAGTGGTGGTGTATTCCTCGCGCATCGACG AGCTGATCAAGCCGGTGTTCGATGCCTACACCAGCAAGACCGGCGTGAAGGTCAAGTTCATCACCGACAAGGAAGCGCCGCTGATGGCGCGGATCAAGGC CGAAGGCGCTAACACCCCGGCCGACCTGCTGCTCACCGTGGACGCCGGCAACCTCTGGCAGGCCGAGCAGATGGGCCTGCTGCAACCGTTCAAGTCGGCC ACCATCGAACGGAACATTCCCTCGCAGTATCGTTCCAGCACCGATAGCTGGACCGGACTGTCGCTGCGCGCGCGGACCATCGTCTACTCCACCGAGCGGG TCAAGCCGGAAGAGCTGAGCACCTACGAAGCCCTGGCCGACAAGCAATGGGAAGGCCGCCTGTGCCTGCGCACGGCGAAGAAGGTCTACAACCAGTCGCT GACCGGGACCCTGATCGAGACCCACGGGGCGCAGAAGACCGAGGAAATCCTCCAGGGCTGGGTGAACAACCTGGCCACCGACGTATTCGCCGACGACAAC GCGGTGATCCAGGCGGTGGACGCCGGCCAGTGCGACGTCGGCATCGTCAATACCTACTACTACGGGCGCCTGCACAAGCAGAACCCGAACCTGCGGGTCA AGCTGTTCTGGCCGAACCAGGCCGACCGCGGCGTCCACGTCAACCTGTCGGGCATCGGCCTGACTCGCCACGCGCCGCATCCCGAGGCAGCCAAGGCGCT GGTGGAATGGATGACCGGGCCCGACGCCCAGGCGCTGTTCGCCGGGATCAACCAGGAATTCCCGGCCAACCCGCAGGTCGCGCCGTCAGCCGAAGTCGCC AGCTGGGGCAGCTTCAAGGCCGACAGCATCCCGGTGGAAGTTGCCGGCAAGCGCCAGGCCGAGGCGATTCGCCTGATGGACCGCGCCGGCTGGAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
CCGCCGGTTATACTCGACGCCCCGGCTCGTCCGAGCGGGGCGTCGTTCGTTCCGCACCGAGGATTTCGTGGCCCATCCCGCTCCCCGCCGCTGGTACCCC ATCACCTTCACCGTTGCCGCGCTGGTGCTGCTGCCGCTCAGCGTGCTGCTGCTGAGCTGGCTGGAGATCGACCGGGAAATCTGGAGCCACCTGTGGGATA CCCAGTTGCCGCGCCTGCTCGGCAACACCCTGACACTGGTGCTCGGCGTCGGCATCGGCGTGACTCTGCTCGGGGTCAGCCTGGCCTGGCTCACCAGCCT CTGCGAATTCCCCGGGCGGCGCTGGCTGGACTGGGCGCTGATGTTGCCGTTCGCGATCCCGGCCTACGTCCTGGCGTTCGTCTTCGTCGGCCTGCTGGAT TTCGCCGGACCGGTGCAGAGCCTGCTGCGCGAGTGGTTCGGCAGCGGCCTGCGGTTGCCGCGCGTACGCTCCACCGGCGGGGTGATCCTGGTCCTGGTGC
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Amino Acid Sequence |
>iron ABC transporter substrate-binding protein
MQASKALLAALALGITGLAQAADEVVVYSSRIDELIKPVFDAYTSKTGVKVKFITDKEAPLMARIKAEGANTPADLLLTVDAGNLWQAEQMGLLQPFKSA TIERNIPSQYRSSTDSWTGLSLRARTIVYSTERVKPEELSTYEALADKQWEGRLCLRTAKKVYNQSLTGTLIETHGAQKTEEILQGWVNNLATDVFADDN AVIQAVDAGQCDVGIVNTYYYGRLHKQNPNLRVKLFWPNQADRGVHVNLSGIGLTRHAPHPEAAKALVEWMTGPDAQALFAGINQEFPANPQVAPSAEVA SWGSFKADSIPVEVAGKRQAEAIRLMDRAGWN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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