Pseudomonas aeruginosa CF5, Q004_04843
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa CF5 genomic scaffold adgfB-supercont1.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTCATGTGCACGTCTTCCAGGTCGACGCGCCAGTCGAAGCTGCCGGCTTCGATTTCCGCCTGGATCTGTTGCAGGCCGTCGACGATCGCATCGCGCTCG GCGTCGCTCAGCACGCCGACCTTGGCCAGCATCGTGGCGTGGGCGATGGAACCTATGATGTCGTGGCGGTAGAGACGCTTGTCGAAGTCGACGGAGGCGG TGAAACGGGCGACGAAGGCGTCGACGGGCTCGCTGAAGCGGCCGCCCCAGGACTGGTTGGTCTTCTCTACGCTCATGGTATCTCTCGCTGCAACAAGAAA CGGACAGGCCGCGCGGCCTGCGTGACGGGCAAAGTGCGACGATGATAGCAGGCCGGGAGGAAAAACCGGCGGCTCGTCGACGAAGCCGGAACGAGCGCTG TTTCGCGGTTTTTTGCGGCAGATGGCATTTCGGTGCTTTATTTCGCCCGTACGCCCGCGGCTGTCTTGCGGGCGCCACGGGCCTTGCGGAAACTCTGTCG
|
|
| DNA Sequence for Gene |
>Q004_04843
ATGCCTATCCGATTCAAGCCCGGCCGCTCGACCCGGCCGGCCGTCCAAGACGACTTCTTCATTCCCGAGCTCTGCGAAGCCGAAGCCCTGTTCACCCTGG TGCTGCTGGCGGAGCTGCTGGTGCTCGTGCTGGTGCTGGCGGAGCCGATGACGCCGAGCTTCAACTGGGTGCGCCTGGCCCTGGCGTCGCTGTTCGTGCA GTGGATCGTACTGCTCTCGGCGGCGCTGTTCTGCCGCCTGCGGCCATTGCTCGCACGCCTGCCGGTGGCGCTGGCGGGGAGTGCCTGCTGCCTGTTGGTG GTGGCCCTCACCCTGGGCTGCACGGCGGTCGCCGAGCACTATCAGCTGGGCGGAGAACTGACGCGTGCCGGCGAGGTCAATCTGTATCTGCGGCACGCGC TGATCGCGCTGATCATGTCCGCCCTGGTGCTGCGCTACTTTTACCTGCAGAGCCAGTGGCGCCGGCAGCAGCAGGCCGAGTTGCAGGCGCGCCTGGAATC GCTGCAGGCGCGGATTCGCCCGCACTTCCTGTTCAACAGCCTGAACAGCATCGCCAGCCTGATCGAGCTGGACCCGCTGAAGGCCGAGCATGCGGTGCTG GACCTGTCCGACCTGTTCCGGGCCAGCCTGGCGAAGCCCGGCACTTTAGTTTCCTGGGGGGAGGAACTGGCGCTGGCAAGGCGCTATCTTTCCATTGAGC AGTATCGTCTTGGCGATCGCCTGCAACTGGACTGGCAGGTGCACGGGGTGCCGGCCAACCTGCCGATCCCCCAACTGACCTTGCAGCCGCTGCTGGAAAA TGCGCTTATTTATGGCATCCAGCCGCGGGTCGAAGGTGGCCTGGTGCAGGTCGAGGCGGTTTATCGTGAAGGAGTGTTCCAGCTATGTGTGAGCAACCCC TACGACGAGGCGCTCGAGTCGCCCCCGTCGAAAGGCACGCGACAGGCGTTACACAATATCGATGCACGACTTGGGGCACTTTTCGGGCCTAAAGCGAGTC TCAGCGTCGAGCGCCGTGACGGACGGCACTACACCTGTCTACGCTATCCATGTGCGCGACTCATGCAGGAAGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCTTATGAATGTCCTGATTGTCGATGACGAACCTCTGGCGCGAGAGCGCCTGGCCCGATTGGTAGGGCAGCTGGACGGCTATCGCGTCCTCGAGCCCTCG GCCAGCAATGGCGAAGAAGCGCTGACGCTGATCGACAGCCTCAAGCCCGATATCGTCCTGCTGGATATCCGCATGCCCGGTCTGGACGGCCTCCAGGTCG CGGCCAGACTCTGCGAGCGGGAAGCGCCGCCGGCTGTGATCTTCTGCACGGCCCATGACGAATTCGCCCTGGAAGCCTTCCAGGTCAGCGCCGTGGGCTA CCTGGTCAAGCCGGTGCGCAGCGAAGACCTGGCCGAGGCGTTGAAGAAAGCCTCGCGACCGAACCGCGTGCAACTGGCCGCGCTGACCAAGCCCCCGGCC TCCGGCGGCAGCGGTCCGCGCAGCCACATCAGTGCACGGACCCGCAAGGGGATCGAGCTGATCCCGCTGGAAGAGGTGATCTTCTTCATTGCCGACCACA
|
|
| Amino Acid Sequence |
>alginate biosynthesis protein AlgZ/FimS
MPIRFKPGRSTRPAVQDDFFIPELCEAEALFTLVLLAELLVLVLVLAEPMTPSFNWVRLALASLFVQWIVLLSAALFCRLRPLLARLPVALAGSACCLLV VALTLGCTAVAEHYQLGGELTRAGEVNLYLRHALIALIMSALVLRYFYLQSQWRRQQQAELQARLESLQARIRPHFLFNSLNSIASLIELDPLKAEHAVL DLSDLFRASLAKPGTLVSWGEELALARRYLSIEQYRLGDRLQLDWQVHGVPANLPIPQLTLQPLLENALIYGIQPRVEGGLVQVEAVYREGVFQLCVSNP YDEALESPPSKGTRQALHNIDARLGALFGPKASLSVERRDGRHYTCLRYPCARLMQEA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|