Pseudomonas aeruginosa CF5, Q004_03025

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00962	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00962	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00962	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF04539	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00962	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00962	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
NCBIfam	TIGR02937	JCVI: sigma-70 family RNA polymerase sigma factor	IPR014284	RNA polymerase sigma-70 like domain	11	233	1.1E-33
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	41	54	2.1E-11
Gene3D	G3DSA:1.20.140.160	-	-	-	85	235	9.4E-44
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	155	236	1.35E-20
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	88	155	9.16E-13
Pfam	PF04545	Sigma-70, region 4	IPR007630	RNA polymerase sigma-70 region 4	182	231	5.5E-19
PANTHER	PTHR30385	SIGMA FACTOR F FLAGELLAR	-	-	6	237	4.0E-50
Hamap	MF_00962	RNA polymerase sigma factor FliA [fliA].	IPR028617	RNA polymerase sigma factor FliA	1	236	67.680824
FunFam	G3DSA:1.10.1740.10:FF:000002	RNA polymerase sigma factor FliA	-	-	1	83	1.7E-40
Gene3D	G3DSA:1.10.1740.10	-	-	-	1	83	8.2E-26
SUPERFAMILY	SSF88946	Sigma2 domain of RNA polymerase sigma factors	IPR013325	RNA polymerase sigma factor, region 2	3	86	5.1E-26
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	218	229	2.1E-11
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	14	86	4.7E-20
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	186	198	2.1E-11
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	203	218	2.1E-11
NCBIfam	TIGR02479	JCVI: FliA/WhiG family RNA polymerase sigma factor	IPR012845	RNA polymerase sigma factor, FliA/WhiG	14	233	4.6E-82
FunFam	G3DSA:1.20.140.160:FF:000001	RNA polymerase sigma factor FliA	-	-	85	235	2.2E-71
Pfam	PF04539	Sigma-70 region 3	IPR007624	RNA polymerase sigma-70 region 3	95	158	2.9E-9
PIRSF	PIRSF000770	SigK_SigE	IPR000943	RNA polymerase sigma-70	1	238	1.7E-35
CDD	cd06171	Sigma70_r4	-	-	176	230	3.42634E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.