Pseudomonas aeruginosa UDL, Q006_01765
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa UDL genomic scaffold adgeV-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGATCGGCAACGCCATCGAGAAGAAGGAGCTGCCCCTGGTGGTCGGCATCCTCGCCGACCTCTCCGGCAAGCCGGATACCCCGCCGGCGAAGCTGGTC GAACGGCGTTTCGTCGACATCGACCGCGACAACTTCAACGAGATCCTCTCCTCCATCTCTCCCCGCGCCACCCTGCAGGTCGACAACACCATCAGCGGCG ACGACAGCAAGCTGAACGTCGAGCTGCGCTTCAACCACATCGAGGACTTCGACCCGGTCAACCTGGTGAAGCAGGTGGTCCCGTTGCGTCGCCTGTTCGA AGCACGCCAGCGCCTGCGCGACCTGCTGACCAAGCTCGACGGCAACGACGACCTCGACCAGTTGCTGCAGGACGTGGTGGCCAACACCGAAGGCCTGCAG GAAATCAAAGCGGCCCGCCCGGAAGCCGAAGCGGCCCCGGCCGGCGACAGCGAACCCCCGGCCGACCAGCCGGCCTGACCCTCTTCCCGGAGAAGCCGCC
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| DNA Sequence for Gene |
>Q006_01765
ATGCCCAAGTCATCCGCCGCCGAACAATCCGGCGAGAGTTCGACCCAGACCCTGTCCCTGCTCGACGAGATCATCGCAAAGGGCCGCATGGCCCACGACG ACAGCCAGCAGGACTATGCCCGCGACATGCTCGCGGAATTCGCCACCCAGGTCCTCGACGAGGGCATGGCCGTCGACAAGGACACCGTGGCGATGATCAA CGACCGCATCAGCCAGATCGATGCGCTGATCAGCGACCAGCTCAACCAGATCATCCACCACCCCGAGTTGCAGAAGCTGGAAGCCTCCTGGCGCGGCCTG CACCAACTGGTGAGCAACACCGAGACCAGCGCGCGGCTCAAGCTGCGCCTGCTGAACGTCGGCAAGAACGAACTGCAGAACGACCTGGAGAAGGCGGTCG AGTTCGACCAGAGCGCACTGTTCAAGAAGATCTACGAAGAGGAATACGGCACCTTCGGCGGACACCCCTTCAGCCTGCTGATCGGCGACTTCACCTTCGG TCGCCATCCGCAGGACATCGGCCTGCTGGAGAAGCTGTCGAACGTCGCCGCGGCTGCCCACGCGCCGTTCATCGCCGCCGCCAGCCCACGCCTGTTCGAC ATGAACAGCTTCACCGAACTGGCCGTACCGCGCGACCTGACCAAGATCTTCGAGAGCCTGGAGCTGATCAAGTGGCGCGCCTTCCGCGAGAGCGAGGATT CGCGCTACGTGTCCCTGGTGCTGCCGAACTTCCTCCTGCGCCTGCCCTACGGCCCGGAGACGCGCCCGGTGGAAGGCATGAACTATGTCGAGGACGTCAA CGGCACCGACCACTCCAAGTACCTCTGGGGCAACGCCGCCTGGGTCCTGGCGCAGCGCATCACCGAGGCCTTCGCCAAGTACGGCTGGTGCGCGGCGATC CGCGGCGCGGAAGGCGGCGGCGCGGTCGAGGGCCTGCCAGCGCACACGTTCCGCACCAGCTCCGGCGACCTGTCGCTGAAATGCCCGACCGAAGTGGCGA TCACCGACCGCCGCGAGAAGGAACTCAACGATCTCGGCTTCATTTCCCTGTGCCACAAGAAGAACAGCGACGTGGCGGTGTTCTTCGGCGGCCAGACCAC CAACAAGGCCAGGCTCTACAACACCAACGAGGCCAACGCCAACGCGCGCCTGTCGGCGATGCTGCCGTACGTGCTGGCGGCATCGCGCTTCGCCCACTAC CTGAAGGTGATCATGCGCGACAAGGTCGGCAGCTTCATGACCCGCGACAACGTGCAGACCTACCTGAACAACTGGATCGCCGACTACGTGCTGATCAACG ACAACGCACCGCAGGAAATCAAGGCGCAGTACCCGCTGCGCGAGGCGCGGGTGGATGTCAGCGAGGTGGCCGGCAAACCGGGGGCCTACCGCGCCACGGT GTTCCTCCGGCCGCACTTCCAGCTCGAGGAACTCAGCGCGTCGATCCGCCTGGTCGCCAACCTGCCGCCGCCGGTAGCGGCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTCGCCCCCGCCGGCAGCGCCGGCGGGGCGCCCTTCCCGTTCCAGACAGCCCCTCTCCAGGAGTCAGATGCGATGGATGCGATCATTCTCGATTTCGGC AGCGACATCAAAGGCGACAGCCTGCTCGTCGGCTACGAAAACAAGATCGAAATCATGTCCTACAGCCACAACGTGGCGATGCAGGTCACCAACGACGTCA GCAACTCGGAACGCACCTCCGGCAAACCCCACGTCGGCGAATTCACCCTCACCAAGTTCATCGACACCTCGACCCCGACCCTCAACGAGTATTGCTGCGC CGGCAAGCCGATCGCCGAGGCGACCATCACCATCGGCCGCAACGCCGCCGAGGGCAACGGGCAGATCATGCCCTTCATCGTCTACACCCTGAACAACGTG GTGCTCTCCAACGTCAGCGTCAGCGGCGGCGCCGGCGGCAAGCCGGTGGAAACCCTGTCGCTGAACTTCACCAAGATCAAGTGGGAGCTGACCGCGCAGA
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| Amino Acid Sequence |
>EvpB family type VI secretion protein
MPKSSAAEQSGESSTQTLSLLDEIIAKGRMAHDDSQQDYARDMLAEFATQVLDEGMAVDKDTVAMINDRISQIDALISDQLNQIIHHPELQKLEASWRGL HQLVSNTETSARLKLRLLNVGKNELQNDLEKAVEFDQSALFKKIYEEEYGTFGGHPFSLLIGDFTFGRHPQDIGLLEKLSNVAAAAHAPFIAAASPRLFD MNSFTELAVPRDLTKIFESLELIKWRAFRESEDSRYVSLVLPNFLLRLPYGPETRPVEGMNYVEDVNGTDHSKYLWGNAAWVLAQRITEAFAKYGWCAAI RGAEGGGAVEGLPAHTFRTSSGDLSLKCPTEVAITDRREKELNDLGFISLCHKKNSDVAVFFGGQTTNKARLYNTNEANANARLSAMLPYVLAASRFAHY LKVIMRDKVGSFMTRDNVQTYLNNWIADYVLINDNAPQEIKAQYPLREARVDVSEVAGKPGAYRATVFLRPHFQLEELSASIRLVANLPPPVAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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