Pseudomonas aeruginosa JJ692, Q008_04928
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa JJ692 genomic scaffold adgfu-supercont1.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGATCCGGCGCGGCAGCATTCCTTCATCGTCACCGAGGAACTGGCGCCGACCGTGGACCTCGAGGTGTTCTCCCAGGACTGGCGCGAGCGTCCTCCAC CGCCGCGGCTCAAGCGCGCGCTGGTAGAGGCGGTGGCGCGGATGGTCGGCGACATGCACCGTGCCGGAGTCAACCATCGCGACTGCTACATCTGTCATTT CCTGTTGCACACCGACAAGCCGGTGAGCGCGGACGATTTCCGCCTCTCGGTGATCGACCTGCACCGTGCCCAGACCCGCGACGCCACGCCGAAACGCTGG CGTAACAAGGATCTGGCGGCATTGTATTTCTCTGCGCTGGACATCGGACTGACGCGTCGCGACAAGCTACGCTTCCTGCGCACCTATTTCCGCCGGCCGT TGCGCGAGATACTGCGCGACGAGGCCGGCCTGCTGGCCTGGATGGAACGCAAGGCGGAAAAACTCTACGAACGCAAGCAGCGTTACGGAGACCTGCTCTG
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| DNA Sequence for Gene |
>Q008_04928
ATGGCGGGGTGGACCCTCGAACCCGATTACCGTCACCTGGCCGCCGACTTCGGTAGCCTCGATAGCGTGTTCGCCCTGGAGGGCGAGCGCCTGACCCGCG ACCCGTTGTCCGAAGTCATCCGCATCGAGCGCGACGGCGTGCGTTACTACGTCAAGCGCTACCGCAGCGCCGGCAAGGGCTTGCGCCGCTACCTGGCGCG ACCGCGGATCAAGGCCGAGTGGCAGAACCTCAAGCGCTTCGAGAAGTGGGGCATTCCCACCGCCGAAGTGGTCGCCTGGGGGCTGGAGCGCAAGGCTGGC GCCTTCCAGCGCGGCGCCATGATCACCCGCGAACTGCCGGGCACCGAGGACTTGTCGGTGCTCGCCTGCAACCGGGATCCGCGCCTGAAGGACCCACGCT GGGTGGACGGCGTCAGCCGGCAGATCGCCAAGGCTACGCGCCTGATGCACGACCAGCATTTCACCCACAATGACCTGAAGTGGCGCAACCTGCTGGTGGA CGACCAGCCGCTGGTGTATTTCATCGACTGCCCGAACGGCGCATTCTGGTGGAGCTTCATGCTGCGCTACCGGATCACCAAGGACCTGGCCTGCCTGGAC AAGGTGGCCAAGTACCACCTGTCGCGCACCCAGCGCCTGCGCTTCTACCTGCAATATCGCCGTCGCCGGCACCTGAACGAATCCGACAAGAAGCGTATTC GCCAGGTGGTGGCTTTCTTCGAGGGGCGCGAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTTTTCATCGCCGCGCAGGACCACGACCTGCTCCAGCGCAACCGTCTGGACAGCTTCGACGCCCTGTGGGCCTTGCAGCTGGACGCCGTGGACGAACC GAATACCGAGCGGGGTGGCTGGAGCAGCGTCTACCGCCTCGACCTGGGCGACTCCGCCTACTACCTGAAGCGCCAGAGCAACCACCTGACCCGCAGCCTG CGCCATCCGCTGGGCGAGCCGACCTTCGCCCGCGAGTTCCGCAACATCGAGCGCTACCGGGCGCTGGGCATTCCCGCCCTGCAGGCGGCGTTCTTCGCCC AGCAGGCGGTCGGCGGAGAGCGCCAGGCGATCCTCCTGACCCGTGCCCTGGACGGTTGGCAGGACCTGGACACCTGGCTGGCGTCCTGGCACGACCTGGC CGAAGAGCGGCGCCGGGCGATTCTCCGGGCGGTTGGCAGGCTGGCGCGCCAGCTGCACGCGGCCGGACAGATGCATGGTTGCTTCTATCCCAAGCATGTA
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| Amino Acid Sequence |
>putative lipopolysaccharide core biosynthesis protein
MAGWTLEPDYRHLAADFGSLDSVFALEGERLTRDPLSEVIRIERDGVRYYVKRYRSAGKGLRRYLARPRIKAEWQNLKRFEKWGIPTAEVVAWGLERKAG AFQRGAMITRELPGTEDLSVLACNRDPRLKDPRWVDGVSRQIAKATRLMHDQHFTHNDLKWRNLLVDDQPLVYFIDCPNGAFWWSFMLRYRITKDLACLD KVAKYHLSRTQRLRFYLQYRRRRHLNESDKKRIRQVVAFFEGRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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