Pseudomonas aeruginosa JJ692, Q008_00035

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas aeruginosa JJ692 genomic scaffold adgfu-supercont1.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCGCGACCTCGATGCGGTGGAAGGGCTGCGCCGGCACTTCGTCGCGAGTGGCGTGGAAGTCGCCACCCAGGCCGAGGCCATCGCCCAGGTGCGCAGCCTC AGCCGCAACCTCGGCCTGGTGTTCTGGATCGTCGCCGCGCTGGCCATCGGCGGTGCCTTCGCGGCCATCGCCGCCAGCAGCCTGGCCGCCGTCGAACGCA AGCGCCGCGCCCTGGCGGTGCTGCGTCTGCTGGGCTTCCCGACCGCCGCGCTGGTCGGCTTCGTCATGCTCCTGGCGCTGTTCAGCGCCGTCTTCGGCCT GTTCCTCGCCGGGCTGCTGTACGCCGCCACGGCCGGCGCGCTGAACCACCTGTTCGACAACCAGAGCGGCGAGTTCGTCTGCCGCCTGCTGCCCAGCCAC TACCTGACGGCGCTGCTCGCCACGCTGCTGTGCAGCGTCCTGGCCGCCGCCAGCGGCGGCTGGCGCGCGGCGCGGATCGAAGCCGCAGAGGGATTACGCG
DNA Sequence for Gene
>Q008_00035
ATGTTTGAGAAAGCCATTCTTCCGCTCGCCCTCGGCGCCTGCCTGGCATTTGCCGCGCCGGCCTGGGCCGAAGGCGACTCGCCGGACAATCCCAAGCCGC TGGCCGACGACGTCGCCCTGCCGCTGCCGTGTGGCGGCGAGATGGTCTTCCGGCATGTCTACGTACTCGCCGAAGGCGCCCTCGACGATCGCGAGGTCAA CCTCGGCTACGCCTTCAACGAAGGCGAGGCGGGCTACCAGCAGTCGTTCATCTCCGGCTACCGGCGCGACTACGTGAACGGCCAGTTCAGCCTCGCCGAC CTGGCACCGGCCTGGCAGCAGAAGCTCTCCGCCAGCCTGCCGAAGCCTGCCGCCGGCACCCCGCTGAAGCCGATGCTGTACTTCATCGGCAAGTACGAGG TGACCGCCCGCCAGTACGCCGCAGTGATGAGCCAGGCGGCCGCGCTCTCCGGCCAGGGCGAAGCGCCGGCCTGCGACGTGCCGGGCGGGATGGCCGCGCG GCTGCCCAAGGTCGACCTCTCGCGCTTCGACGCCGAACGCTTCGGCGCGGTGTACAGCGCCTGGCTGCTGAAGAACCACCCGGATCTGCTGCCGGTCAGC GGCCGCGGCAAGAATCCCGAGGACGGCGGCATCGGCTTCGTCCGCCTGCCCACCGAGGTCGAGTGGGAGTTCGCCGCGCGCGGCGGCCAGGCGGTCAGCC GCCAGGAACTGGAAGGCCGGCTGTTCCCGCGCAAGGTCGAGGGCAGCGACCAGGAAGGCCCGCTGGGCGACTGGGCGGTGTACAACCAGGTCGCCGGCGG TACCGGCCAGGCCGCGCGACTGTTGCCGGTAGGGATGAAGCGGCCGAACCCGCTGGGCCTGTTCGACGTGATCGGCAATGCCGCGGAGATGGTCCAGGAG TCCTTCCAACTGGTCCACGCCGGACGCCGGCAGGGCACATATGGCGGTTTCGTGGTGAAGGGCGGGAACTATCTCGAAGGCGAGATGACTCTATTCACCG GGATGCGCCGCGAATACCCGCTGTTCGCCGCCGACGGCAGCGAACAGCGCAACGAGACCACCGGTTTCCGCGTCGCCATCGGCGCGCTGTCCGCGCCGCG CTCGCGCTATCCCGAGCTGTTCGCCCAATGGCAGAAGGAAGGCCGACTAGCGGCATTGACCGATGCCATCGATGACGCTCAAGATCCCACCAAGCAATTG GACGGAATCATTGCCGCCACCCGCGACCCGCAGATGCAGGCGCAGTTGGCCCAGATAAACGAGGAACTCAAGCGTAACGTTTCGTTGATCGCCCGGCAGC GCGAAGAGGCCGCCGGAAACCTGATACAGTCGGCGGCACTGGTCGCCGAGACGATCAACAACTACAACATACGCCTGACCAACCTCAAGAAGGACAGGGA GAAAGCCGTGGCAGCCAGGGATCAGGCGACCGCCCAGCTCTATGCCGGCGCCATCGCCAACGGGCGCAGCGCCCTCGATGGCGCATTGGCCATCTACATC GACAACCTCGCCACCGGCACCCGTTACACCGACGCGGTGATCCAGGCGCAGTTCCAGCGCATCCAGGAAGAACTCAATCGCAACCCGGTTCTGGGCAAGA GCCTGGTCAAGCGCGCGACCCTGTTCGTCAAACACGTCGGAGATTATCGCCAGCAGCACCGGGCCGAGCCGGAGGCGGTATTGAAGGAATTGCTCGCGTC CAGCGGGCGTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGGAGTTCCGTCCGGCACCTCTCGGCAGCCGGGCGGTTCATCAAACCAGGAGTGAGATGCAATGAGCCAACCCAGCGAAAACCGTTTGATCACCTCGGCG CGCTACGCGCTCTGCCTGTTGACCGCCAGCGGCGTGCTGCTCAGCGGCTGCGCCAGCAGCGGCGTCGGCTCGGTCGCACAGACCACCCGCGCGGAATACT ACCCGTCCTGCTACGAGCCGGTGTCGCACCTGCGCAGCACCGATAACGCGGTGCGCAACTCGGCCATCACCGGCGCCATCACCGGCGGCCTGCTGGGCGG CCTGGCCGGCGGCCTGGCCAGCGACGAGAACCGCGGCCGCAATGCCGCCCTCGCTGCCGCAGGCGGCGCCCTGGCCGGCGGCGCGGCGGGCTACTACATG GAGAAACAGAAGCAGATCAGCGACGACCGCGCGCGCATCGGCTCCTACGCTACCGACGTCGACCGCAGCACCGTCGAGATCAACCGTAGCGTGGCCTACG
Amino Acid Sequence
>type VI secretion protein
MFEKAILPLALGACLAFAAPAWAEGDSPDNPKPLADDVALPLPCGGEMVFRHVYVLAEGALDDREVNLGYAFNEGEAGYQQSFISGYRRDYVNGQFSLAD LAPAWQQKLSASLPKPAAGTPLKPMLYFIGKYEVTARQYAAVMSQAAALSGQGEAPACDVPGGMAARLPKVDLSRFDAERFGAVYSAWLLKNHPDLLPVS GRGKNPEDGGIGFVRLPTEVEWEFAARGGQAVSRQELEGRLFPRKVEGSDQEGPLGDWAVYNQVAGGTGQAARLLPVGMKRPNPLGLFDVIGNAAEMVQE SFQLVHAGRRQGTYGGFVVKGGNYLEGEMTLFTGMRREYPLFAADGSEQRNETTGFRVAIGALSAPRSRYPELFAQWQKEGRLAALTDAIDDAQDPTKQL DGIIAATRDPQMQAQLAQINEELKRNVSLIARQREEAAGNLIQSAALVAETINNYNIRLTNLKKDREKAVAARDQATAQLYAGAIANGRSALDGALAIYI DNLATGTRYTDAVIQAQFQRIQEELNRNPVLGKSLVKRATLFVKHVGDYRQQHRAEPEAVLKELLASSGR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site