Strain | Pseudomonas aeruginosa 19660 genomic scaffold adgew-supercont1.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CAGCCACGCGCCGAACTGCTCCTCGGGCGCCTCTACTACGACGGCAAGTGGGCGCCGCAGGACCCGCGCAAGGCCGAGCGGCACCTGCTCAAGGCCGCCG CCAGCGAACCCCAGGCCAACTACTACCTGGGGCAGATCTACCGCCGCGGCTTCCTCGGCAAGGTCTATCCGCAGAAGGCCGTCGACCACCTGATCCTCGC CGCCCGCGCCGGCCAGGCCAGCGCCGACATGGCCCTGGCCCAGCTCTGGTCGCAGGGCCGCGGCATCCAGCCGAACCGGGTCAACGCCTACGTCTTCGGC CAGCTCGCCGTGCAGCAGCAGGTACCGCAGGCCAGCGACTTGCTCGGGCAGATCGAAGCGCAACTGCCGCCGGCCGAACGCAGCCAGGCGCAGCAATTGC TCAAGCGCGAACAACAGAGCCGCGGCAACAACTGGCAGGCCACCGTCAGCCTGCTGCAGAGCCAGGACTCGCCGATCAACGAAGAAGAGCCAGAAAGCCT
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DNA Sequence for Gene |
>Q010_00756
ATGAACAGCTCCCGTTCCGTCAACCCGCGGCCGTCCTTCGCGCCGCGCGCCCTGTCCCTGGCCATCGCCCTGCTGCTCGGCGCGCCGGCGTTCGCCGCCA ACAGCGGCGAGGCGCCGAAGAACTTCGGCCTGGACGTGAAGATCACCGGCGAATCGGAAAACGATCGCGACCTCGGCACCGCTCCCGGCGGCACCCTCAA CGACATCGGTATCGACCTGCGGCCCTGGGCCTTCGGCCAGTGGGGCGACTGGAGCGCCTACTTCATGGGCCAAGCGGTGGCCGCCACCGACACCATCGAG ACCGACACCCTGCAATCGGACACCGACGACGGCAACAACAGCCGCAACGACGGTCGCGAGCCGGACAAGAGCTACCTCGCCGCACGCGAATTCTGGGTCG ACTACGCCGGCCTCACCGCCTACCCCGGCGAGCACCTGCGCTTCGGCCGCCAGCGCCTGCGGGAAGACAGCGGCCAGTGGCAGGACACCAACATCGAGGC GCTGAACTGGAGCTTCGAGACCACCCTGCTCAACGCCCACGCCGGGGTCGCCCAGCGTTTCAGCGAATACCGCACCGACCTCGACGAACTGGCTCCGGAG GACAAGGACCGCACCCACGTGTTCGGCGACATTTCCACCCAGTGGGCGCCGCACCACCGCATCGGCGTGCGCATCCACCACGCCGACGACAGCGGCCACC TGCGCCGCCCCGGCGAGGAAGTCGACAACCTCGACAAGACCTATACCGGCCAGCTCACCTGGCTCGGCATCGAGGCTACCGGCGATGCCTACAACTATCG TTCGAGCATGCCGCTGAACTACTGGGCCAGCGCCACCTGGCTGACCGGCGACCGCGACAACCTGACCACCACCACGGTCGACGACCGGCGCATCGCCACC GGCAAGCAGAGCGGCGACGTCAATGCCTTCGGCGTCGACCTTGGCCTGCGCTGGAACATCGACGAGCAGTGGAAGGCCGGCGTCGGCTACGCCCGTGGCA GCGGCGGTGGCAAGGACGGCGAGGAGCAGTTCCAGCAGACCGGTCTGGAGAGCAACCGCTCCAACTTCACCGGCACCCGCTCGCGCGTGCACCGCTTCGG CGAAGCCTTCCGCGGCGAACTGAGCAACCTCCAGGCAGCCACCCTGTTCGGCTCCTGGCAACTGCGCGAGGACTACGACGCGAGCCTGGTCTACCACAAG TTCTGGCGCGTCGACGACGACTCCGACATCGGCACCAGCGGCATCAACGCCGCCCTGCAACCGGGCGAGAAGGACATCGGCCAGGAACTCGACCTGGTGG TGACCAAGTACTTCAAGCAAGGCCTGCTGCCGGCCTCGATGAGCCAGTACGTCGACGAGCCCTCGGCGCTGATCCGCTTCCGCGGCGGCCTGTTCAAGCC GGGCGACGCCTACGGGCCGGGCACCGACTCGACCATGCACCGCGCCTTCGTCGACTTCATCTGGCGCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCCCCGCGAGGAAACCGGACATGCCCGACATTTCCCTTTCGATCCCCCGCCGCCGGCTCCCGCGCCTGCGCCCGCTGGCCGCGGCAGTGCTCGGCGCGGT GCTGCTGCACGGCCAGGCGTGGGCGGCGCAGCCGGTGGAGAAACCGCAGCCGGTCCCGGCGCAGGCCGGCAACGAGCCGGGCCTGACCCAGGGCCTGAAG GAAACCGGCAACTACACGGTGACCACCGCGCCGGCCGAGCCGCTGCACCTGGACCCACCGAAACTGCCCGACCTCTCCGGCTACACCGCCGCCGCGGTGG AAGCCAAGATCGTGCGCAAGCCGGGTGGCCGCGCCAGCGTGCAGCGGATGGTCCAGCAGCAGCCGCTGAAGGAGTTCACCGGTGGCAGCAACCGCCTCGC CGAATGGGTCAAGCGCCAGCGCCAGATGCCCCAGGCGATCTTCATCGAAGGCGGCTACGTGAACCTCGCCCAGCTCGCCGGCAAGCTTCCCGCCAGCGCG
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Amino Acid Sequence |
>alginate regulatory protein AlgE
MNSSRSVNPRPSFAPRALSLAIALLLGAPAFAANSGEAPKNFGLDVKITGESENDRDLGTAPGGTLNDIGIDLRPWAFGQWGDWSAYFMGQAVAATDTIE TDTLQSDTDDGNNSRNDGREPDKSYLAAREFWVDYAGLTAYPGEHLRFGRQRLREDSGQWQDTNIEALNWSFETTLLNAHAGVAQRFSEYRTDLDELAPE DKDRTHVFGDISTQWAPHHRIGVRIHHADDSGHLRRPGEEVDNLDKTYTGQLTWLGIEATGDAYNYRSSMPLNYWASATWLTGDRDNLTTTTVDDRRIAT GKQSGDVNAFGVDLGLRWNIDEQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFGEAFRGELSNLQAATLFGSWQLREDYDASLVYHK FWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGLLPASMSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTMHRAFVDFIWRF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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