Pseudomonas aeruginosa 6077, Q011_03880
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 495 | 653 | 7.4E-42 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 381 | 483 | 4.93059E-17 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 497 | 651 | 1.7E-45 |
| Pfam | PF05228 | CHASE4 domain | IPR007892 | CHASE4 | 63 | 225 | 2.5E-28 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 444 | 486 | 8.1E-5 |
| PANTHER | PTHR46663 | DIGUANYLATE CYCLASE DGCT-RELATED | - | - | 12 | 660 | 1.8E-110 |
| Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 373 | 483 | 9.9E-16 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 502 | 657 | 9.42E-47 |
| Pfam | PF00672 | HAMP domain | IPR003660 | HAMP domain | 321 | 368 | 8.3E-8 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 495 | 660 | 3.1E-57 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 498 | 655 | 1.54662E-62 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 359 | 484 | 4.51E-28 |
| SUPERFAMILY | SSF158472 | HAMP domain-like | - | - | 321 | 369 | 6.93E-5 |
| CDD | cd06225 | HAMP | - | - | 323 | 367 | 3.39807E-5 |
| Gene3D | G3DSA:6.10.340.10 | - | - | - | 290 | 371 | 1.3E-8 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 492 | 658 | 4.6E-45 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 372 | 438 | 6.3E-15 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 369 | 493 | 1.1E-22 |
| SMART | SM00304 | HAMP_11 | IPR003660 | HAMP domain | 320 | 372 | 3.2E-7 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 372 | 494 | 6.6E-26 |
| Coils | Coil | Coil | - | - | 353 | 373 | - |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 486 | 657 | 7.8E-64 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.