Pseudomonas aeruginosa PAO1, PA4885 (irlR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00383
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00383
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00383
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Two-component regulatory systems Other PAO1 genes in this class
Transcriptional regulators Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Two-component System ECO:0000037
not_recorded
KEGG pae02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.50.2300:FF:000001 DNA-binding response regulator PhoB - - 1 79 4.8E-26
PANTHER PTHR48111 REGULATOR OF RPOS IPR039420 Transcriptional regulatory protein WalR-like 1 217 5.1E-59
NCBIfam TIGR01387 JCVI: heavy metal response regulator transcription factor IPR006291 Transcriptional regulatory protein CusR-like, heavy metal response 3 218 2.9E-104
CDD cd00383 trans_reg_C IPR001867 OmpR/PhoB-type DNA-binding domain 131 218 1.74272E-33
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 119 222 6.1E-30
Pfam PF00486 Transcriptional regulatory protein, C terminal IPR001867 OmpR/PhoB-type DNA-binding domain 144 218 7.4E-26
Gene3D G3DSA:3.40.50.2300 - - - 1 79 4.5E-18
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1 178 8.9E-40
Gene3D G3DSA:6.10.250.690 - - - 80 118 1.1E-18
FunFam G3DSA:1.10.10.10:FF:000005 Two-component system response regulator - - 120 221 1.6E-38
CDD cd19935 REC_OmpR_CusR-like - - 3 101 9.56041E-58
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1 111 1.3E-39
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 3 111 5.6E-25
SMART SM00862 Trans_reg_C_3 IPR001867 OmpR/PhoB-type DNA-binding domain 144 219 4.9E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.