Pseudomonas aeruginosa PAO1, PA4743 (rbfA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009409 response to cold
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 8898389 Reviewed by curator
Molecular Function GO:0043024 ribosomal small subunit binding
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 7535280 Reviewed by curator
Biological Process GO:0030490 maturation of SSU-rRNA
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 9422595 Reviewed by curator
Biological Process GO:0006364 rRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02033
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Adaptation, Protection Other PAO1 genes in this class
Translation, post-translational modification, degradation Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.300.20 - IPR015946 K homology domain-like, alpha/beta 4 119 6.6E-38
NCBIfam TIGR00082 JCVI: 30S ribosome-binding factor RbfA IPR000238 Ribosome-binding factor A 1 114 1.2E-33
Hamap MF_00003 Ribosome-binding factor A [rbfA]. IPR000238 Ribosome-binding factor A 6 112 26.804071
FunFam G3DSA:3.30.300.20:FF:000029 Ribosome-binding factor A - - 4 119 1.3E-78
Pfam PF02033 Ribosome-binding factor A IPR000238 Ribosome-binding factor A 7 112 8.1E-34
SUPERFAMILY SSF89919 Ribosome-binding factor A, RbfA IPR023799 Ribosome-binding factor A domain superfamily 2 106 1.83E-35
PANTHER PTHR33515 RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED IPR000238 Ribosome-binding factor A 3 127 9.2E-32

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.