Pseudomonas aeruginosa PAO1, PA4477 (cafA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCTGGCGCGCGGCAAGGCGGCCGCCGGGCTGGCTATGCTGGAAGGGCGCGGCGAGGACGGTTGTGTCCTGGGCGCGGATACCTCGGTGGTGATCGACGG GCGAATTCTCGGCAAGCCCGTGGACCAGGCCGACGGGCTGGCCATGCTGGCTGCGCTGTCCGGGCGCGAACACCAGGTTCTCACCGCCGTGGCCCTGGCC GCCGCTGGCGGCGTCGAGGCGCGGGTGGTGGAGTGCCGGGTGCGCTTCCGCCAGGTCGCTCCGGAAGAAGCGCTGCGCTACTGGCAGAGCGGCGAGCCGG CGGACAAAGCGGGCGGATATGCGATCCAGGGCCTCGGGGCGATATTCGTCAGCCGCATCGAAGGCAGTTACAGTGCGGTGGTCGGGCTGCCTTTGTGTGA AACTGCGGAACTGTTGAGGGAATTCGGCATCCCTTGCTGGCAGCCCGTGGGTGGCAACCCGCCGTAACGCCTAACGCGCCGAAATAAGGACAGTGGACGC
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| DNA Sequence for Gene |
>PA4477
|cafA
ATGAGCGAAGAGATCCTGATCAATATCACGCCGATGGAGTCGCGCGTGGCGGTGGTGGAAAACGGCGTCCTGCAGGAAGTGCATGTCGAACGCACCCAGC GGCGCGGCATCGTCGGCAATATCTACAAGGGGCGGGTGGTACGGGTACTGCCGGGGATGCAGGCGGCGTTCGTCGACATCGGCCTGGAACGTGCGGCGTT CATCCATGCCGCCGAGATATCCAATCGCGAAGGCAGCGCCGTGGAAAGCATCAGTGCCCTGGTCCATGAGGGGCAGGCGCTGGTGGTGCAGGTGACCAAG GATCCGATCGGCACCAAGGGCGCACGGCTGACCACCCACCTGTCGATTCCTTCGCGCTATCTGGTGTACATGCCGCGCACCAGTCATGTCGGGATATCCC TGCGGATCGAGGACGAAGTCGAGCGCGAGCGCCTGAAGAAGGTAGTGGCCGACTGCGTGGCGGCGGAAGGCATCGAGGGACAGGGCGGCTTCATCCTGCG CACCGCCGCGGAAGGTGCGGGCGAGGACGAGATTCTCGCCGACATCCGCTACCTTCGCCGGCTATGGGACCAGATCGCCGCGCAGATCCAGACCGTCGGC GCGCCTTCGGTGATCTACGAAGACCTGTCCCTGGCGATCCGTACCCTGCGCGACCTGGTGAACCCGCGGATCGAGAAGATCCGCATTGACTCGCGAGAGA ACTTCCAGAAGATCACTTCCTTCGTCGAAGAATTGATGCCGGAGATTTCCGATCGCCTCGAACATTACCCGGGCGAGCGACCGATCTTCGATCTCTACGG CGTCGAGGACGAAATCCAGAAAGCCCTGGAGCGCAAGGTACTGCTGAAGTCCGGCGGCTACCTGATCGTCGATCCGACCGAGGCGATGACCACCATCGAC GTGAACACCGGCGCCTTCGTCGGCCATCGCAACCTCGAGGAAACCATCTTCAAGACCAACCTCGAGGCGGCCACCGCGATCGCCCGCCAGCTGCGCCTGC GCAACCTGGGCGGGATCATCATCATCGACTTCATCGACATGGAGGACGAGGAGCATCGCCGGCAGGTCCTGCGCACCCTGGAGAAGCAACTGGAGCGCGA CCACGCGAAGACCAACATCATCGGCATCACCGAGTTGGGCCTGGTGCAGATGACCCGCAAGCGCACCCGCGAAAGCCTGGTGCAGATCCTCTGCGAGCCG TGCCCCTGCTGCCAGGGACGCGGCATGCTGAAGACTGCGGAAACCACCTGCTACGAGATTTTCCGCGAGATTCTCCGCGAGGCGCGTGCCTACCAGGCCG ACTCCTACCTGGTGCTGGCCAACCAGAAGGTGGTGGACCGGCTGCTCGACGAGGAGTCGGGTAACGTCGCCGATCTCGAGGCGTTCATCGGCCGCACCAT CAAGTTCCAGGTCGAGGCGATGTACTCGCAGGAGCAATATGACGTGGTCCTGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCGTATGGCTGAAATGGCGGATGTGGGAAGCCTCGGAACGCGACTGCTACGGATCGTCCTGGGTCTGTGCGCCCTGGTACTGGTGCTGCTGGCGCTGTA CGTCAGCCTTGGCCGGCAACTGGTGCCGCTGGTGGCCGAATACCGCCAGCAGCTGGAGGACGAAGCTGGCAAGCAACTCGGCATACCGGTGCGGATTGCC GAACTGACGGGCTCCTGGCGCGGCTTCGAGCCTCTGGTGGTAGCGCGCGACATTCAGGTCGGCGACGGCGAACAGAGTCTGCGCCTGGCGCGGGTGCGGC TGGCGCCGGACCTGCTCGGCAGCCTGCTGGCGCGCCAGGTGCGGATCGGCAGCCTGGAGCTGGAGGGACTCAAGCTGACCCTGCGCGAAGGTGAGGATGG CCAGTGGAGCCTGGATGGCCTGCCGCACAGCGACAAGCCCAGCGATCCCCGGAAACTCCTGCAATTCCTGCTGCAGACCCAACGCATCTCGCTGCTGGAC
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| Amino Acid Sequence |
>cytoplasmic axial filament protein
MSEEILINITPMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGRVVRVLPGMQAAFVDIGLERAAFIHAAEISNREGSAVESISALVHEGQALVVQVTK DPIGTKGARLTTHLSIPSRYLVYMPRTSHVGISLRIEDEVERERLKKVVADCVAAEGIEGQGGFILRTAAEGAGEDEILADIRYLRRLWDQIAAQIQTVG APSVIYEDLSLAIRTLRDLVNPRIEKIRIDSRENFQKITSFVEELMPEISDRLEHYPGERPIFDLYGVEDEIQKALERKVLLKSGGYLIVDPTEAMTTID VNTGAFVGHRNLEETIFKTNLEAATAIARQLRLRNLGGIIIIDFIDMEDEEHRRQVLRTLEKQLERDHAKTNIIGITELGLVQMTRKRTRESLVQILCEP CPCCQGRGMLKTAETTCYEIFREILREARAYQADSYLVLANQKVVDRLLDEESGNVADLEAFIGRTIKFQVEAMYSQEQYDVVLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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