Pseudomonas aeruginosa PAO1, PA4270 (rpoB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TTCGGCGTTACCGCTGCTGCCGCTACCGTTGCCGCTGCTGGCCCGGCTGCTGCCGCTGCCGAAGAGCAGACCGAGTTCACCATCGTCCTGGCCGAAGCTG GCGACAAGAAAGTGAACGTGATCAAGGTCGTTCGCGAACTGACCGGTCTGGGTCTGAAAGAAGCCAAGGCCGTCGTAGACGGCGCTCCGGGCGTGGTGAA GGAAGGCGCTTCGAAAGAAGAAGCCGAAGCCGCCAAGAAAGCCCTGGAAGAAGCAGGCGCCAAAGTCGAGCTCAAGTAAGCGACGACCTTGCGTCTACAG CCCGAGCGTCAAGCGAAAGGCTGATGGCTGGTGGCTTTTGCCACCGGCCTTTTTCCGTTCTGGGTGGACTCGCCTCGGGCGTTCCACCCAAGACGTGAAA GTGCCCCGAGTGGGCAATGCAGGCCAAGGGGTCTGCAAGATTTTCCGGCTGCTCCCGTCGGAGACGCCAAACAAGCAGGTGACCAAGCTGGGGAACGCTG
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| DNA Sequence for Gene |
>PA4270
|rpoB
ATGGCTTACTCATACACTGAGAAAAAACGTATCCGCAAGGACTTTAGCAAGTTGCCGGACGTCATGGATGTGCCGTATTTGCTGGCCATCCAGCTGGATT CCTATCGCGAATTCCTGCAGGCTGGCGCAACCAAGGAGCAGTTCCGCGATGTCGGTCTGCACGCGGCCTTCAAGTCCGTTTTCCCGATTATCAGCTATTC CGGCAATGCTGCCCTGGAATACGTCGGCTACCGTCTGGGTGAGCCGGCATTCGATGTCAAGGAGTGCGTGCTGCGCGGCGTGACCTTCGCCGTACCGCTG CGCGTGAAAGTTCGCCTGATCATCTTCGACCGCGAGTCGTCGAACAAGGCGATCAAGGACATCAAGGAACAAGAAGTCTACATGGGGGAAATCCCCCTGA TGACCGAGAACGGTACCTTCATCATCAACGGTACCGAGCGTGTCATCGTCTCCCAGCTGCACCGTTCCCCGGGCGTGTTCTTCGACCACGACCGTGGCAA GACCCACAGCTCCGGCAAGCTGCTGTACTCCGCGCGGATCATTCCTTACCGCGGTTCCTGGCTGGACTTCGAGTTCGATCCGAAGGACTGCGTGTTCGTC CGTATCGACCGTCGCCGCAAGCTGCCGGCCTCGGTACTGCTGCGCGCGCTCGGCTACAGCACGGAAGAGATCCTCAACGCCTTCTACGCGACCAACGTCT TCCACATCAAGGGCGAGACCCTGAACCTGGAACTGGTCCCGCAGCGCCTGCGCGGTGAAGTCGCGAGCATCGACATCAAGGATGGCAGCGGCAAGGTGAT CGTGGAGCAGGGGCGTCGTATCACTGCCCGCCACATCAACCAGCTGGAAAAGGCTGGCGTGAGCCAGCTGGAAGTGCCGTTCGACTACCTGATCGGCCGT ACCATCGCCAAGGCGATCGTGCATCCGGCTACCGGCGAGATCATCGCCGAGTGCAACACCGAGCTGACCCTCGACCTCCTGGCCAAGGTGGCCAAGGCCC AGGTCGTGCGCATCGAGACCCTGTACACCAACGACATCGACTGCGGTCCGTTCATCTCCGACACCCTGAAGATCGACAACACCAGCAACCAGCTGGAAGC CCTGGTCGAGATCTACCGGATGATGCGTCCGGGCGAGCCGCCGACCAAGGAAGCTGCCGAGACCCTGTTCGGCAACCTGTTCTTCAGCGCCGAGCGTTAC GACCTGTCGGCCGTAGGCCGGATGAAGTTCAACCGCCGTATCGGTCGTACCGAGATCGAAGGTCCGGGCGTCCTGAGCAAGGAAGACATCATCGATGTGC TCAAGACCCTCGTCGACATCCGTAACGGCAAGGGCATCGTCGATGACATCGACCACCTGGGCAACCGTCGTGTCCGTTGCGTCGGCGAAATGGCCGAGAA CCAGTTCCGCGTGGGCCTGGTGCGTGTCGAGCGCGCGGTCAAGGAACGCCTGTCCATGGCCGAAAGCGAAGGCCTGATGCCGCAAGACCTGATCAACGCC AAGCCGGTGGCTGCCGCGATCAAGGAGTTCTTCGGTTCGAGCCAGCTGTCGCAGTTCATGGACCAGAACAACCCGCTTTCCGAGATCACCCACAAGCGCC GCGTCTCCGCGCTCGGCCCGGGCGGTCTGACCCGTGAGCGTGCGGGCTTCGAGGTTCGTGACGTACACCCGACCCACTACGGCCGCGTGTGCCCGATCGA AACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCCCTGGCGACCTACGCCCGCACCAACAAGTACGGCTTCCTCGAGAGCCCGTACCGCGTGGTCAAG GACAGCCTGGTAACCGACGAGATCGTGTTCCTGTCGGCGATCGAAGAAGCCGACCACGTCATCGCCCAGGCTTCGGCGACCCTCAACGAGAAGGGTCAAC TGGTGGACGAGCTGGTGGCCGTGCGTCACCTGAACGAATTCACCGTGAAGGCGCCGGAAGACGTGACCCTGATGGACGTGTCGCCGAAGCAGGTCGTTTC CGTCGCTGCCTCGCTGATTCCGTTCCTCGAGCACGATGACGCCAACCGCGCACTCATGGGCTCGAACATGCAGCGTCAGGCCGTGCCGACCCTGCGTGCC GACAAGCCGCTGGTGGGTACCGGCATGGAGCGCAACGTGGCGCGCGACTCCGGCGTCTGCGTCGTGGCTCGCCGTGGCGGTGTGATCGACTCGGTCGATG CCAGCCGTGTCGTGGTTCGCGTGGCGGATGACGAAGTCGAGACCGGCGAAGCGGGTGTCGACATCTACAACCTGACCAAGTACACTCGTTCCAACCAGAA CACCTGCATCAACCAGCGTCCGCTGGTGAGCAAGGGTGACGTGGTCGCGCGCGGCGACATCCTGGCCGACGGTCCGTCCACCGACATGGGCGAACTGGCC CTGGGCCAGAACATGCGCGTAGCGTTCATGCCCTGGAACGGCTTCAACTTCGAAGACTCCATCTGCCTGTCCGAGCGCGTGGTCCAGGAAGATCGTTTCA CCACGATCCACATCCAGGAACTGACCTGCGTCGCTCGTGACACCAAGCTCGGCCCAGAGGAAATCACCGCGGACATCCCGAACGTGGGCGAGGCCGCGCT GAACAAGCTGGACGAAGCCGGTATCGTCTACGTCGGCGCCGAAGTGCAGGCCGGCGACATCCTGGTCGGCAAGGTCACTCCGAAAGGCGAGACCCAGCTG ACTCCGGAAGAGAAGCTGCTGCGCGCGATCTTCGGTGAGAAGGCGTCCGACGTGAAGGACACCTCCCTGCGTGTGCCGACCGGCACCAAGGGTACCGTCA TCGACGTTCAGGTCTTCACCCGCGACGGCGTCGAGCGCGATTCCCGCGCGCTGTCCATCGAGAAGATGCAACTCGACCAGATCCGCAAGGACCTGAACGA AGAGTTCCGCATCGTCGAAGGCGCGACCTTCGAGCGTCTGCGTGCCGCCCTGGTCGGTGCCAAGGCTGAAGGTGGCCCGGCGCTGAAGAAGGGCACGGAG ATCACCGACGACTACCTCGACGGTCTCGAGCGCGGCCAGTGGTTCAAGCTGCGCATGGCCGACGACGCCCTGAACGAACAGCTGGAGAAGGCCCAGGCCT ACATCAGCGATCGTCGCCAGCTCCTGGACGACAAGTTCGAGGACAAGAAGCGCAAGCTGCAGCAGGGCGACGACCTGGCTCCGGGCGTGCTGAAGATCGT CAAGGTCTACCTGGCGATCAAGCGTCGCATCCAGCCGGGCGACAAGATGGCCGGCCGTCACGGTAACAAGGGTGTGGTCTCGGTGATCATGCCGGTGGAA GACATGCCGCACGATGCCAACGGCACCCCGGTCGACATCGTCCTCAACCCGCTGGGCGTACCGTCGCGTATGAACGTCGGTCAGATCCTCGAAACCCACC TGGGCCTCGCGGCCAAGGGGCTGGGCGAGAAGATCAACCGCATGCTCGAAGAGCAGCGCAAGGTCGCCGAACTGCGTAAGTTCCTGCACGAGATCTACAA CGAGATCGGCGGTCGCGAGGAAAACCTCGACGAGCTGGGCGACAACGAGATCCTCGCGCTGGCCAAGAACCTGCGCGGTGGCGTACCGATGGCGACCCCG GTGTTCGATGGCGCCAAGGAACGCGAGATCAAGGCCATGCTGAAGCTGGCCGACCTGCCGGAAAGCGGCCAGATGCGTCTGTTCGACGGCCGTACCGGCA ACCAGTTCGAGCGTCCGACCACCGTCGGCTACATGTACATGCTCAAGCTGAACCACCTGGTGGACGACAAGATGCACGCCCGTTCCACCGGCTCGTACAG CCTGGTTACCCAGCAGCCGCTGGGTGGTAAGGCACAGTTCGGTGGTCAGCGCTTCGGTGAGATGGAGGTGTGGGCGCTGGAAGCCTATGGCGCGGCGTAC ACCCTGCAGGAAATGCTGACGGTCAAGTCGGACGACGTGAACGGCCGGACCAAGATGTACAAGAACATCGTGGACGGCGATCACCGCATGGAGGCCGGCA TGCCCGAGTCCTTCAACGTTCTGATCAAAGAGATCCGTTCGCTCGGCATCGACATCGAACTGGAAACCGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACGTGACGCTAGACGGTGCGGCTGGTCAAGGCCGGTCGCACCGGGTCCGTGAGGAGGAAAGGCCTTGAAAGACTTGCTTAATCTGTTGAAAAACCAGGG TCAAATCGAAGAGTTCGATGCCATCCGTATTGGCCTGGCTTCGCCCGAGATGATTCGTTCCTGGTCTTTCGGCGAAGTTAAAAAGCCGGAAACCATCAAC TACCGTACCTTCAAGCCGGAGCGCGACGGCCTGTTCTGCGCCAAGATCTTCGGCCCGGTGAAGGATTACGAGTGCCTGTGCGGCAAGTACAAGCGCCTCA AGCACCGCGGTGTGATCTGCGAGAAGTGCGGCGTGGAAGTCGCCCTGGCCAAGGTGCGCCGCGAGCGCATGGGCCACATCGAGCTGGCTTCGCCGGTTGC CCACATCTGGTTCCTGAAGTCGCTGCCGTCCCGTATCGGCCTGCTGCTGGACATGACCCTGCGCGATATCGAGCGCGTGCTCTATTTCGAGAGCTACGTG
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| Amino Acid Sequence |
>DNA-directed RNA polymerase beta chain
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKEQFRDVGLHAAFKSVFPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPL RVKVRLIIFDRESSNKAIKDIKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVFV RIDRRRKLPASVLLRALGYSTEEILNAFYATNVFHIKGETLNLELVPQRLRGEVASIDIKDGSGKVIVEQGRRITARHINQLEKAGVSQLEVPFDYLIGR TIAKAIVHPATGEIIAECNTELTLDLLAKVAKAQVVRIETLYTNDIDCGPFISDTLKIDNTSNQLEALVEIYRMMRPGEPPTKEAAETLFGNLFFSAERY DLSAVGRMKFNRRIGRTEIEGPGVLSKEDIIDVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDLINA KPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNKYGFLESPYRVVK DSLVTDEIVFLSAIEEADHVIAQASATLNEKGQLVDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRA DKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRVVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDVVARGDILADGPSTDMGELA LGQNMRVAFMPWNGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVQAGDILVGKVTPKGETQL TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDQIRKDLNEEFRIVEGATFERLRAALVGAKAEGGPALKKGTE ITDDYLDGLERGQWFKLRMADDALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPGDKMAGRHGNKGVVSVIMPVE DMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMLEEQRKVAELRKFLHEIYNEIGGREENLDELGDNEILALAKNLRGGVPMATP VFDGAKEREIKAMLKLADLPESGQMRLFDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY TLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIELETE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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