Pseudomonas aeruginosa PAO1, PA4269 (rpoC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGAAGCTGGCCGACCTGCCGGAAAGCGGCCAGATGCGTCTGTTCGACGGCCGTACCGGCAACCAGTTCGAGCGTCCGACCACCGTCGGCTACATGTACA TGCTCAAGCTGAACCACCTGGTGGACGACAAGATGCACGCCCGTTCCACCGGCTCGTACAGCCTGGTTACCCAGCAGCCGCTGGGTGGTAAGGCACAGTT CGGTGGTCAGCGCTTCGGTGAGATGGAGGTGTGGGCGCTGGAAGCCTATGGCGCGGCGTACACCCTGCAGGAAATGCTGACGGTCAAGTCGGACGACGTG AACGGCCGGACCAAGATGTACAAGAACATCGTGGACGGCGATCACCGCATGGAGGCCGGCATGCCCGAGTCCTTCAACGTTCTGATCAAAGAGATCCGTT CGCTCGGCATCGACATCGAACTGGAAACCGAATAACACGTGACGCTAGACGGTGCGGCTGGTCAAGGCCGGTCGCACCGGGTCCGTGAGGAGGAAAGGCC
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| DNA Sequence for Gene |
>PA4269
|rpoC
TTGAAAGACTTGCTTAATCTGTTGAAAAACCAGGGTCAAATCGAAGAGTTCGATGCCATCCGTATTGGCCTGGCTTCGCCCGAGATGATTCGTTCCTGGT CTTTCGGCGAAGTTAAAAAGCCGGAAACCATCAACTACCGTACCTTCAAGCCGGAGCGCGACGGCCTGTTCTGCGCCAAGATCTTCGGCCCGGTGAAGGA TTACGAGTGCCTGTGCGGCAAGTACAAGCGCCTCAAGCACCGCGGTGTGATCTGCGAGAAGTGCGGCGTGGAAGTCGCCCTGGCCAAGGTGCGCCGCGAG CGCATGGGCCACATCGAGCTGGCTTCGCCGGTTGCCCACATCTGGTTCCTGAAGTCGCTGCCGTCCCGTATCGGCCTGCTGCTGGACATGACCCTGCGCG ATATCGAGCGCGTGCTCTATTTCGAGAGCTACGTGGTGATCGATCCGGGCATGACCACCCTGGAAAAGGGCCAGCTGCTGAACGACGAGCAATACTTCGA GGCCCTCGAAGAGTTCGGTGACGATTTCGATGCTCGCATGGGCGCCGAAGCTGTTCACGAACTGCTCAACGCCATCGACCTGGAGCACGAGATCGGCCGC CTGCGCGAAGAGATTCCGCAGACCAACTCGGAAACCAAGATCAAGAAGCTGTCCAAGCGCCTGAAGCTGATGGAAGCCTTCCAGGGCTCCGGCAACAAGC CTGAGTGGATGGTCCTGACCGTCCTGCCGGTGCTGCCGCCGGACCTGCGTCCGCTGGTTCCGCTGGATGGCGGTCGCTTCGCGACTTCCGACCTGAACGA CCTGTATCGTCGGGTGATCAACCGTAACAACCGTCTGAAGCGCCTGCTCGACCTGGCTGCTCCGGACATCATCGTGCGCAACGAAAAGCGCATGCTGCAG GAAGCCGTCGACGCCCTGCTCGACAACGGCCGTCGCGGTCGCGCCATCACCGGCTCGAACAAGCGTCCGCTGAAGTCGCTGGCCGACATGATCAAGGGCA AGCAAGGTCGCTTCCGTCAGAACCTGCTCGGCAAGCGCGTGGACTACTCCGGTCGTTCCGTGATCACCGTGGGCCCGACCCTGCGCCTGCACCAGTGCGG TCTGCCGAAGAAGATGGCCCTGGAGCTGTTCAAGCCGTTCATTTTCGGCAAGCTGGAAGGTCGTGGTATGGCCACCACCATCAAGGCCGCCAAGAAAATG GTCGAGCGCGAGCTGCCCGAGGTCTGGGACGTTCTCGCCGAAGTCATCCGCGAGCATCCGGTTCTCCTGAACCGTGCGCCGACCCTGCACCGTCTGGGCA TCCAGGCGTTCGAGCCGGTCCTCATCGAAGGCAAGGCGATCCAGCTGCACCCGCTGGTCTGCGCCGCGTACAACGCCGACTTCGACGGTGACCAGATGGC CGTCCACGTTCCGCTGACCCTCGAGGCCCAGCTGGAAGCGCGCGCGCTGATGATGTCCACCAACAACATCCTGTCGCCCGCCAACGGCGAGCCGATCATC GTTCCGTCGCAGGACGTGGTAATGGGTCTGTACTACATGACCCGTGAAGCGATCAACGCGAAGGGCGAGGGCATGGCCTTCGCCGACCTGCAGGAAGTCG ACCGCGCCTACCGCAGCGGCCAGGCGTCCCTGCACGCTCGCGTAAAAGTGCGCATCAACGAAAAGATCAAGGGTGAAGACGGCCAACTGACCGCCAATAC CCGTATCGTCGACACCACCGTCGGCCGCGCGCTGCTGTTCCAGGTCGTTCCGGCCGGCCTGCCGTTCGACGTGGTCAACCAGTCGATGAAGAAGAAGGCG ATCTCCAAGCTGATCAACCACTGCTATCGCGTGGTGGGTCTGAAGGACACCGTCATCTTCGCCGACCAGCTGATGTACACCGGTTTCGCCTACTCGACCA TTTCCGGCGTGTCCATCGGCGTCAACGACTTCGTCATCCCGGACGAGAAGGCGCGGATCATCAACGCCGCCACCGACGAAGTGAAGGAGATCGAGAGCCA GTACGCCTCCGGCCTGGTAACCCAGGGCGAGAAGTACAACAAGGTGATCGACCTGTGGTCGAAGGCCAACGACGAAGTGTCCAAGGCGATGATGGCCAAC CTCTCGAAAGAGAAGGTCGTCGATCGCGAGGGCAAGGAAGTCGACCAGGAGTCCTTCAACTCCATGTACATGATGGCTGACTCGGGTGCGCGGGGCTCCG CGGCCCAGATCCGTCAGCTGGCAGGTATGCGTGGCCTGATGGCCAAGCCGGACGGCTCGATCATCGAGACCCCGATCACCGCGAACTTCCGTGAAGGCCT GAACGTACTCCAGTACTTCATCTCCACCCACGGTGCTCGTAAGGGTCTGGCGGATACCGCGCTGAAGACCGCGAACTCCGGTTACCTGACCCGTCGTCTG GTCGACGTGGCCCAGGATCTGGTAGTGACCGAGATCGATTGCGGTACCGAGCACGGCCTGCTGATGTCGCCGCACATCGAAGGCGGCGACGTGGTCGAAC CGCTCGGCGAGCGCGTGCTCGGCCGTGTGATCGCGCGCGACGTGTTCAAGCCGGGCAGCGACGAGGTCATCGTGCCGGCCGGCACCCTGATCGACGAGAA GTGGGTGGACTTCCTCGAAGTGATGAGCGTCGACGAAGTGGTGGTGCGTTCCCCGATCACCTGCGAAACCCGTCATGGCATCTGCGCCATGTGCTACGGC CGCGACCTGGCCCGTGGCCATCGCGTCAACATCGGCGAGGCGGTCGGTGTCATCGCTGCCCAGTCCATCGGTGAGCCGGGCACCCAGCTGACCATGCGTA CCTTCCACATCGGTGGTGCGGCCAGCCGGACCTCCGCGGCCGACAACGTCCAGGTGAAGAACGGCGGCACCATCCGCCTGCACAACCTGAAGCATGTGGT TCGTGCCGACGGCGCGCTGGTCGCGGTTTCCCGTTCCGGCGAACTGGCGGTTGCCGACGACTTCGGTCGCGAGCGCGAGCGCTACAAGCTGCCGTACGGT GCGGTGATCTCGGTCAAGGAAGGTGACAAGGTCGACCCGGGCGCTATCGTCGCCAAGTGGGACCCGCACACCCACCCGATCGTCACCGAGGTGGACGGTA CCGTGGCCTTCGTGGGCATGGAAGAGGGCATCACCGTCAAGCGTCAGACCGACGAACTGACCGGCCTGACCAACATCGAAGTGATGGATCCGAAGGACCG TCCGGCTGCCGGCAAGGACATCCGTCCGGCCGTGAAGCTGATTGATGCCGCGGGCAAGGACCTGCTGCTGCCGGGTACCGACGTACCGGCGCAGTACTTC CTGCCGGCCAACGCCCTGGTCAACCTGACCGACGGCGCCAAGGTGAGCATCGGTGACGTTGTCGCGCGTATCCCGCAGGAAACCTCGAAGACCCGTGACA TCACCGGTGGTCTGCCGCGCGTTGCCGACCTGTTCGAGGCTCGTCGTCCGAAAGAGCCTTCGATCCTGGCGGAAATCAGCGGCACCATCTCCTTCGGCAA GGAGACCAAGGGCAAGCGCCGCCTGGTCATCACGCCGAACGATGGCAGCGATCCGTACGAGGAGCTGATTCCGAAGTGGCGTCACCTGAACGTGTTCGAA GGCGAACAGGTGAACCGCGGCGAAGTCATCTCCGACGGTCCGAGCAACCCGCACGACATCCTGCGCCTCCTGGGCGTGAGCTCGCTGGCGAAGTACATCG TCAACGAGATTCAGGACGTCTACCGTCTGCAGGGCGTGAAGATCAACGACAAGCACATCGAGACCATCCTGCGTCAGATGCTGCGCAAGGTCGAAGTCAG CGAGTCCGGCGACTCCAGCTTCATCAAAGGCGACCAGGTGGAACTCACCCAGGTGCTGGAAGAGAACGAACAGCTCGGTACCGAGGACAAGTTCCCGGCC AAGTACGAGCGGGTTCTGCTGGGTATCACCAAGGCCTCCCTGTCGACCGAGTCGTTCATTTCCGCGGCGTCGTTCCAGGAGACCACCCGCGTCCTCACCG AGGCGGCGGTCACCGGCAAGCGCGACTTCCTGCGTGGTCTGAAAGAGAACGTGGTCGTGGGTCGCCTGATCCCGGCCGGTACCGGTCTGGCTTACCACAG CGAACGCAAGCGTCAGCGCGACCTCGGCAAGCCGCAGCGTGTGAGTGCCAGCGAGGCGGAAGCCGCACTGACCGAAGCGCTGAACTCGAGCGGTAACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCATCAACGACAAGCCCCGGCTATCCCGATAGCCGGGGCTTTGTCTTGACGGTGTACAAGAACCTCTTTACTATTTTGTACCCCGAAAATTGGCAGGGCG CACGCTCTGTCATTTCGTTTGTGTGTCGTAAGACAATCAGTGGAGCTATAGATGGCAACTATCAACCAGCTGGTGCGTAAGCCGCGCAAGCGCATGGTCG ACAAGAGCGACGTGCCTGCGCTGCAAAACTGCCCGCAACGTCGTGGCGTATGCACCCGCGTATACACCACCACGCCGAAAAAGCCGAACTCGGCACTGCG TAAGGTATGCCGTGTACGTCTGACCAACGGTTTCGAGGTTTCCTCGTACATCGGTGGTGAAGGTCACAACCTGCAAGAGCACAGCGTAGTGCTGATCCGT GGCGGTCGTGTAAAGGACCTTCCGGGCGTGCGTTACCACACCGTGCGCGGTTCGCTGGACACCTCGGGTGTCAAAGACCGTAAGCAGGGTCGTTCGAAGT
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| Amino Acid Sequence |
>DNA-directed RNA polymerase beta* chain
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRE RMGHIELASPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARMGAEAVHELLNAIDLEHEIGR LREEIPQTNSETKIKKLSKRLKLMEAFQGSGNKPEWMVLTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFIFGKLEGRGMATTIKAAKKM VERELPEVWDVLAEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII VPSQDVVMGLYYMTREAINAKGEGMAFADLQEVDRAYRSGQASLHARVKVRINEKIKGEDGQLTANTRIVDTTVGRALLFQVVPAGLPFDVVNQSMKKKA ISKLINHCYRVVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIINAATDEVKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMAN LSKEKVVDREGKEVDQESFNSMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL VDVAQDLVVTEIDCGTEHGLLMSPHIEGGDVVEPLGERVLGRVIARDVFKPGSDEVIVPAGTLIDEKWVDFLEVMSVDEVVVRSPITCETRHGICAMCYG RDLARGHRVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADNVQVKNGGTIRLHNLKHVVRADGALVAVSRSGELAVADDFGRERERYKLPYG AVISVKEGDKVDPGAIVAKWDPHTHPIVTEVDGTVAFVGMEEGITVKRQTDELTGLTNIEVMDPKDRPAAGKDIRPAVKLIDAAGKDLLLPGTDVPAQYF LPANALVNLTDGAKVSIGDVVARIPQETSKTRDITGGLPRVADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE GEQVNRGEVISDGPSNPHDILRLLGVSSLAKYIVNEIQDVYRLQGVKINDKHIETILRQMLRKVEVSESGDSSFIKGDQVELTQVLEENEQLGTEDKFPA KYERVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERKRQRDLGKPQRVSASEAEAALTEALNSSGN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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