Pseudomonas aeruginosa PAO1, PA4086 (cupB1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCCATCCGGAATGCGAGTGGGCGGACATAGGGTTCTCCTCGTCGTGGGAAACCCATGCTGGCCTGTCTTCGAGTATCCCGATATCGACCGGATGGTTGAT AGGTCGATATGCCACGGAAATAGCACGGAGCGGCGAAGGGAAAGTTATCGAAGGTGAAGTCTTAGATGAGTTTTCGTTTCTTCTTTTTTTTGGTTTTTTA GTTAATGGGTTCCTGTTCTTCTATAAGCATTTTCTGAATTTATTCTTATGTGCTTGTTGGCTGTTGTAGGAAATGGACTACATATATTTTCGTATGATTA TTATTTTTAAATCCTGTCTTTCTTTCTAGTATTTGGGTCTGCGTTTATCAGGGCGCAATCTTCGGCTGTCGCGTAATGGTCGGAGGCGCTCTAGGCGGCC GTTCCGGTTGCGCGCAAAGGCTTGGCTACCTTGGCCGGTTCGTACTGCATCGGCTCTCCAGGGAGCAGCCAGGATGTTCCACAACTCCAAAGGAAATCAG
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| DNA Sequence for Gene |
>PA4086
|cupB1
ATGAACAAGTTCAAACGTGCAATTCTTGCGCCCCTCGTTGCGTCGGGCACCCTTCTCGCGCTGATGTCCCCCGTGGCCCATGCGGTCGATGGGATCGTCA ACTTCTCGGGCAACATCACCGAAGTCGCGTGCGATATCAACGGCCAGGCGCCGGGTGCGGGCAACGTCACCAACGTCGACCTGGGTATCGTGGCGCCGAC CCATTTCACCGCCGTCGGAACCAACTCCACTTTCCAGGAGTTCGATCTGGTCCTCTCCGGTGCCGGCTGCACCAATGACAAGAAGGTTTCCATCGCCTTC GATCAGGTCACCAACGTCGACCGTATCAGCGGCAACCTGATGCTGATGGGGCCGTCGGAAGCCAAGGGCGTGCAGATCCAGATCTTCAACAATTCGGCGA CCAACACCACGAAGATCCCGCTGGGCTTGGTCGAGGCCGCCCCGCAGAAGGCAACCGTCGTGAAGAACACGGCGACCCTGAAGTACAAGGCCTCCTATGT GTCCACCGAGAAGGCCGTGACCGCGGGTACCGGCCTGTCCCGTATTCGCTACCTCCTGGCGTACGAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCGGTCGACGGACGAAGAGGTGAGGCCATGGCGCCGCTAATGCATCGTTTTCATTCTTTCGTGGCGGCAAGCGCCGTGGCCATCGCCCTGTGCGTCG GAACGGCTCACGCCGGGCTGATCGCACAGGGCACTCGCGTCGTCTTTCCGGCCAGCGAGCGCGAGGTCACCTTGCGGGTCAGCAATACCTCCGGCACTCC CGTGCTGGCGCAAGCCTGGATCGACGATGGCCGGCAGGACGTTCCCCCCGAGGAACTGCAGGTTCCCTTCAGTGTCACGCCGGCCGTGACGCGAGTGGAG CCCAATGGCGGCGCTGTATTGCGCATCGCCTACCTGAAGGCCCCGTTGCCGACGGATCGCGAATCGCTGTTCTGGCTGAATATCCTGGAAGTTCCGCCCA GGGACGAAGACGAAAACAATGCATTGCAGTTTTCCTTTCGTTCGCGCTTCAAACTCTTCTTTCGACCCAGCCAGTTGAAGAGTGTCGATTCGGCTGCCGG
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| Amino Acid Sequence |
>probable fimbrial subunit CupB1
MNKFKRAILAPLVASGTLLALMSPVAHAVDGIVNFSGNITEVACDINGQAPGAGNVTNVDLGIVAPTHFTAVGTNSTFQEFDLVLSGAGCTNDKKVSIAF DQVTNVDRISGNLMLMGPSEAKGVQIQIFNNSATNTTKIPLGLVEAAPQKATVVKNTATLKYKASYVSTEKAVTAGTGLSRIRYLLAYE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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