Pseudomonas aeruginosa PAO1, PA3790 (oprC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCTCCCAGTCGATGCCGATGGACCACCCGATGCCGATGGGCGTGGGGATGGGCCACGAAGGCATGTCCCACGAGAACATGGACCATGGCGACATGGCCCA TGCCGGCTGTTCCGATGCCCAGCGCTCCGTCGTCCATGCCGGCATGCCGGGGATGGGCGGCGAGGAAGGCAATCGCCTGGCCAGCGACGTGCTCTGGGAG AAGTGCGGTTATTGCAGCCTGTTGTTCCACAGCCCGCCGCTCACCGAAGACGCCTGCCTGGCGCTGTTCTCCGTTCCCTTCGCGACGGCGCCCGCCGTCG CTTTCCTGAACGAGGCGTTCGTCGCCTCGCCGGTGTTTCCCGGCGCCCGTACCCGTGCGCCGCCGTTCCTGATCGCCTGACCTCTTTCAATCCGATAGCC GCCGCTTCCTGGGGGCACCGGCGCGTCTTCGCCGCGCCGGTGACGCGAGCCTGGCCGGGTGCCTGCTCGCCGTGGGGGCGGGGCGGAAGTCACATAGATC
|
|
| DNA Sequence for Gene |
>PA3790
|oprC
ATGGAAAAACGTATGTCTACTCAACAACGAGCGGCCGGCAACGCCTGCCCGACCGCCGCTTTCAGCTTCGACCCTGCCCGTCTCGCACAACGCCGCCGCT GGGCGGGAGCCTTCGCCGCACTGTGCGGCCTGGCCCTGTCTCCGTCGGCGCTCCTGGCCGAGGAACACTCACAGCACCAGGATCACGCCGTGGAGCTGGC GCCGAGCGTGGTCACCGGAGTCGCCCAGAGTTCGCCGCTGACCATCGTCACCAATCCCAAGGAGCCGCGCCAACCGGTGCCGGCCAGCGATGGGGCCGAC TACCTGAAGACCATTCCCGGCTTCGCGGTGATCCGCAACGGCGGCAGCAACGGCGACCCGGTGCTGCGCGGGATGTTCGGTTCGCGCCTGAACATCCTCA CCAACGGCGGCATGATGCTCGGTGCCTGTCCGAACCGGATGGACGCGCCGACCTCCTACATCTCGCCGGAAACCTACGACAAGCTCACCGTGATCAAGGG CCCGCAGACGGTGCTCTGGGGGCCGGGCGCGTCGGCCGGGACGATCCTCTTCGAGCGTGAGCCGGAGCGCTTCGGCGAACTCGGCTCGCGGGTCAACGCC AGCCTGCTGGCCGGCTCCAATGGCCGCTTCGACAAGGTGCTGGACGCCGCCGCCGGCAACCGGCTCGGCTACCTGCGCTTCACCGGCAACCACGCGCAGT CCGACGATTACGAGGACGGCGCCGGGAATACCGTGCCGTCGCGCTGGAAGAAGTGGAACGGCGACGTCGCGGTCGGCTGGACCCCCGACGAGGACACCCT GATCGAACTCACCGCCGGCAAGGGCGACGGCGAGGCACGCTACGCCGGGCGCGGCATGGACGGCTCGCAGTTCAAGCGCGAGAGCCTGGGCCTGCGCTTC GTCAAATCGAACGTCAGCGATGTGCTGGAGAAGGTCGAGGCACAGGTCTACTACAACTACGCCGACCACATCATGGACAACTTCCGCCTGCGCACTCCCG ACCCATCCAGCATGATGCCCATGCCGATGGCGTCCCAGGTGGACCGACGCACCCTCGGCGGTCGCCTGGCGGCCACCTGGCGCTGGGACGACTTCAAGCT GGTCACCGGGGTCGACGCCATGCGCAACGAGCACCGCGCGCGCGGCTCCAAGTACGACATGATGACCGACTACTACACCGACGCCGACCAGTTCCCCTGG AGCAAGGACGCGGTGTTCCACAACTACGGGGCCTTCGGCGAACTGACCTGGTTCGCCGCCGAGCGCGACCGGCTGATCGGCGGGTTGCGCCTGGACCGCG CCTCGGTCAAGGACTACCGGCAGACCCTGAAGTCCGGGCACATGGGCCACGCCATGGCCAACCCGACGGCCAACGACACCCGCGCCGATACCCTGCCCAG CGGCTTCGTGCGCTACGAGCACGACCTCGCCGACTCGCCGACCACCCTCTACGCCGGCCTCGGCCATGCCGAGCGCTTCCCCGACTACTGGGAGCTGTTC TCGCCCAAGCGCGGGCCGAACGGGTCGGTCAACGCCTTCGACAAGATCAAGCCGGAAAAGACCACCCAGCTCGACTTCGGCCTCCAGTACAACGGCGACA AGCTGCAGGCCTGGGCCTCCGGCTACGTCGGGGTGGTCCAGGACTTCATCCTGTTCAGCTATCGCGAGGGCATGATGGGTTCCTCGACCCAGGCGACCAA CGTCGACGCGCGGATCATGGGCGGCGAGCTGGGCGCTTCCTACCAGCTCACCGGCAACTGGAAGACCGACGCCAGCCTGGCCTATGCCTGGGGCAAGAAC AGCTCGGACGACCGCGCGCTGCCGCAGATCCCGCCGCTGGAAGCGCGCTTCGGCCTGACCTACGAGGAAGGCGACTGGAGTGCCGGCAGCCTGTGGCGGG TGGTCGCGCCGCAGAATCGCATCGCCAGGGACCAGGGCAACGTGGTCGGCAAGGACTTCGACAAGAGCGCCGGCTTCGGCGTCTTCTCGCTCAACGGCGC CTACCGGGTGACTCGCAACGTCAAGCTGAGCGCCGGTGTCGATAACCTGTTCGACAAGGATTACACCGAGCACCTGAACAAGGCCGGCGACGCCGGCTTC GGTTTCTCCGCCAACGAAACGGTTCCAGAGCCGGGCCGGACCTTCTGGACCAAGGTCGACTTCAGCTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACCTTCAACGAGGCCCCGTCCAGCGGGGCCCGCCTTGCCTGTGTGCGCTCCGATGAGGTGATCCATGCAATCGAACGAAAAGAACGGCCGTGACTTCTAC GCGCTGGCCTGGCGCTGGCATTTCTACGCTGGCCTGTTCGTCGCGCCCTTCATGATCCTGCTGGCGCTGACCGGAATCGTCTACCTGTTCAAGCCGCAAC TGGATGCGCTGCTCTATCCGCAACTGCTGCGGGTCGAGGCCGGTGCGCAGATGCGCAGCGCCGACCAGTTGCTCGTCGGGGTGCGCCAGGCGCACCCGCA GGCCGCCGTCAGCCAGTACCTGCCGCCGAGCGAGGCGGGGCGCAGCGCGCAATTCGTGATTGGCGAAGAGGGCAGGCAATGGAACCTCTTCGTCGATCCC TACAGCGGGCGCGAACTCGGCCGCCAGGATGCGCAGCTGAATCTCCAGGCGGTGGCCCGGGCACTGCATGGCGAGCTGATGGTCGGGACCGTCGGCGACC
|
|
| Amino Acid Sequence |
>Putative copper transport outer membrane porin OprC precursor
MEKRMSTQQRAAGNACPTAAFSFDPARLAQRRRWAGAFAALCGLALSPSALLAEEHSQHQDHAVELAPSVVTGVAQSSPLTIVTNPKEPRQPVPASDGAD YLKTIPGFAVIRNGGSNGDPVLRGMFGSRLNILTNGGMMLGACPNRMDAPTSYISPETYDKLTVIKGPQTVLWGPGASAGTILFEREPERFGELGSRVNA SLLAGSNGRFDKVLDAAAGNRLGYLRFTGNHAQSDDYEDGAGNTVPSRWKKWNGDVAVGWTPDEDTLIELTAGKGDGEARYAGRGMDGSQFKRESLGLRF VKSNVSDVLEKVEAQVYYNYADHIMDNFRLRTPDPSSMMPMPMASQVDRRTLGGRLAATWRWDDFKLVTGVDAMRNEHRARGSKYDMMTDYYTDADQFPW SKDAVFHNYGAFGELTWFAAERDRLIGGLRLDRASVKDYRQTLKSGHMGHAMANPTANDTRADTLPSGFVRYEHDLADSPTTLYAGLGHAERFPDYWELF SPKRGPNGSVNAFDKIKPEKTTQLDFGLQYNGDKLQAWASGYVGVVQDFILFSYREGMMGSSTQATNVDARIMGGELGASYQLTGNWKTDASLAYAWGKN SSDDRALPQIPPLEARFGLTYEEGDWSAGSLWRVVAPQNRIARDQGNVVGKDFDKSAGFGVFSLNGAYRVTRNVKLSAGVDNLFDKDYTEHLNKAGDAGF GFSANETVPEPGRTFWTKVDFSF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|