Pseudomonas aeruginosa BL01, Q055_03180
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa BL01 genomic scaffold adgeu-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTGCGCCTGGGCGCCGACGGCGAAGCGCGCCGGCTGGCCTTCGACGGCCTGCCGGACGCCTGGACCCGCGGCATGCTGATGGCCGACCGGATGCCGCT GGCCGAGGTGCTCGCCGAACTCGCCCGCTACCGTCGCGGCGTACTGCGCTGCGACCCGCAACTGGCCAGGCTGGCGGTGTCGGGCGCCTATCCGCTGCTG GACCTGCGGCGCACGCTGGGCATGCTGCAGGCCACCTATCCGCTGAAGGTGCGCGGGGTGACCGACTACTGGATCAGCCTGGTGCCGGCGTGACGGCGCG GCCGCCATCCCCGTGGCAAGCGCCCCTCGCGTCCACCCCGGCAGGCCGTCCGCCGTTGCGCCGGAACAGGCGTTGCCATCGACATACCGTGCTCCGCAGA AAAATAACCGCCTCGACCTGAGACCTTTTTCCTTCTCGGCTGGCAAGTAGAGGAATCCGCCCCGACCCAAGGTCCGCAGAGACCACGAGGAACCCTGTAC
|
|
| DNA Sequence for Gene |
>Q055_03180
ATGCCCGTACGCACGCTTCGCCCCCGTTCGCTGTCCCTGGCCATCCACGCCGCCGCCATGACCCTCGCCCTCGCCGGCGCGGCCCCCGACCTGCTTGCCG CCGAGGCGCCCGCCGCCAGCTCGGCGCGCAGCTATGACATCGCCCCCGGCCCGCTCGGTCGCACCCTGTCGGCCTTCGCCAGCGACAACGGGGTATCCCT GGCGTTCGACCCGGTCCTCGCCGAGGGTCGCCGCAGCGCCGCCCTGCGCGGCCGCTACGCGCCGGTCGAGGCGCTGCACCGCCTGCTGCTGGGCAGCGGC CTGGAGTTGCAGCAGCGCAGCGATGGCAGCTACACCCTGGTGCCGGCAGCCACCGATGGCGCGCTGGAACTGCAATCCTCGCTGATCACCGCCCAGGCCG CCGGTGCCGAGACCCTGCCCGCCGAGTACGCCGGCGGCCAGGTGGCCCGTGGCGCGCGCCTGGGCATGCTGGGCAACGCCGACGTGATGGATGCGCCATT CAGCATCACCAGCTACACCGCCAGGACCATCGAGCAGCAGCAGGCGCGCAGCGTCGCCGACCTGCTACAGGCCAACGATCCGTCGGTGCGGGTGGTCGGC GGGCGCGGCGACCTGGTGGACAGCTACACGATTCGCGGCTTCAGCGTGCAGAACGCCGACGTCGCCTTCAACGGCCTCTATGGCCTGCTGCCGTTCTGGC GGGTACCGATCGAATTCGCCGAGCGCGTGGAAGTGCTCAAGGGACCGAACGCCCTGCTCGGCGGGATTTCCCCCGGCGGCAGCGTCGGCGGCACCATCAA CCTGGTGCCCAAGCGCGCCGACGACCAGCCGCTGACCCGCGTCAGCGTCGATTGGACCCAGCGCGGCCAGCTCGGCACTCACCTCGACATCGGCCGACGC TTCGGCGAGAACAACGCCTTCGGCGTGCGCTTCAACGGCGTCTACCGCAACGGCGATACCGCCGTCGACCATCAGAGCCGCGAGTTTCCCATGCTCTCCC TGGGCCTGGACTTCCGTGGCGAGCGCCTGCGCCTGTCCAGCGACCTGCTGTACCAGAAGGAAAGCCTGGAAGGCGTGGTGCGCCCGCTGCTGACCGGCCC GGGAACCACTCACATCCCCCACGCCCCGGACTCGAAGACACGCTTCGGCCTGCGCGATTCCTACCTGGACCAGGAGGATTACTCCATGGTCAACCGCGGC GAGTACGACCTCGCCGACAACCTGACGGCGTTCGCCAGCATCGGCGGTCGCCAGAGCAACTACGAAACCATCGCCGCCAACAGCATCCTCATCGGCAACC AGGGCGATATCGTCAACAGCCTGGCACGCCAGCGCGGCGACCGCCGCACCTATTCCGCCGAGGTCGGCCTGCGCGGCAACTTCGACACCGGCCCGCTCCG CCACGACTGGACGCTCAGCGCCAACCGCCTGCACGAACGGCTGGGCATGGTCTACGCCTTCACCGGGATGCAGCCGGGCAACCTCTACCAGACCTCGCCG CACACGCCGCTGCCGGACTTCTCCAGCCTCGACGGGAGCATTCCGAAGACCAATGAAACCGACCTCGGCGGGGTGGCGCTGGCCGACAGGCTGTCGTTCC TCGAGGATCGCGTGCAGGTCACCCTGGGCGTGCGCCGCCAGCAGATCGAGTCGCGCAACTACGACCAGACCAGCGGCGCGCGCACCAGCCACGACAAGCG GCACGTGTGGACGCCGATGGCCAGCGTGCTGGTCAAGCCGCTGCAGGACCTGTCGCTGTACGCCAACTACATCCAGGGCCTCAGCCAGGGCGAGGCGGCG CCGATGACCGCGGCCAACGCCGGCCAGGTGCTGGCGCCATACAAGGCCGAGCAATACGAGATCGGCGCCAAGTACGACCTGGGCGGCTTCACCACCACCC TGGCGCTGTTCGAGATCAGGAAACCGAACGCCTATACCGACGCCAGCAACGTCTTCCGCGCCGACGGCGAGCAACGCAACCGCGGCGTGGAGCTGAGCCT CTATGGCGAACCCCTGGACGGCGTGCGGGTGATGGCCGGCGCCACCTACATCAAGCCCGAGCAGAACAAGACCGGCGACCCTGCCAGCGAAGGCAAGGAC GCGCCCGGCGTGGCCCGTCGCCAGGCCAACCTGGGGGTCAGCTGGGACACCCCGTTCGTCGACGGACTGACCCTCGACAGCCGCTGGATCTACACCGGCT CGGCCTATGTGGACAGCGCCAACGCCCTCGCCGTGCCGCACTGGAACCGCGTCGACCTCGGCGCCGCCTACGCCTTCCAGGTCGCCGGCAAGCCGCTGGT GGCGCGCGCCAACCTGGAGAACGCGCTGGGCAAGGACTACTGGACCGCAGCCAACGGCTACCTGTCGATCAGCTCGCCGCGCACCCTTTCCCTTTCCCTC ACGGCGGACTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTCCGCCCCACCATAACCAGAAACCGCCGATGACCAGCCAATGACCGCGAAAACCCTGCGCACCTGGTACCTGGTGCACAAATGGACCAGCCTGATCTCC ACGATCTTCCTGCTGATGCTCTGCCTCACCGGGTTGCCGCTGATCTTCCACGAGGAGATCGAGCACTACTTCGAGCCGCATCCGCAGCTCGAGCCGCTCA CCGCCGAGTCGCCGCGCATCGACTACGACGACGTGATCGCCCGCGCCCTGGCCGCCCGGCCGGGCGAAGTGGTGCGCTTCCTGGTATTCGAAAAGGACGA CCCGCTGGGCCTGGTGATCAGCGCGCCGAGCCTGGTACCGCCGCCGGAGAACGGTCACATGCAACCGTTCGACGCGCGCACCGGGGAATTCTTCGACGCG CTGCCGCCGCCGGGCGGCTTCATGTACCTGATGCTGAAGCTGCATACCGACCTGTTCCTCGGCCTGCCCGGCTACCTGTTCCTCGGCCTGATGGGCCTGC
|
|
| Amino Acid Sequence |
>ligand-gated channel
MPVRTLRPRSLSLAIHAAAMTLALAGAAPDLLAAEAPAASSARSYDIAPGPLGRTLSAFASDNGVSLAFDPVLAEGRRSAALRGRYAPVEALHRLLLGSG LELQQRSDGSYTLVPAATDGALELQSSLITAQAAGAETLPAEYAGGQVARGARLGMLGNADVMDAPFSITSYTARTIEQQQARSVADLLQANDPSVRVVG GRGDLVDSYTIRGFSVQNADVAFNGLYGLLPFWRVPIEFAERVEVLKGPNALLGGISPGGSVGGTINLVPKRADDQPLTRVSVDWTQRGQLGTHLDIGRR FGENNAFGVRFNGVYRNGDTAVDHQSREFPMLSLGLDFRGERLRLSSDLLYQKESLEGVVRPLLTGPGTTHIPHAPDSKTRFGLRDSYLDQEDYSMVNRG EYDLADNLTAFASIGGRQSNYETIAANSILIGNQGDIVNSLARQRGDRRTYSAEVGLRGNFDTGPLRHDWTLSANRLHERLGMVYAFTGMQPGNLYQTSP HTPLPDFSSLDGSIPKTNETDLGGVALADRLSFLEDRVQVTLGVRRQQIESRNYDQTSGARTSHDKRHVWTPMASVLVKPLQDLSLYANYIQGLSQGEAA PMTAANAGQVLAPYKAEQYEIGAKYDLGGFTTTLALFEIRKPNAYTDASNVFRADGEQRNRGVELSLYGEPLDGVRVMAGATYIKPEQNKTGDPASEGKD APGVARRQANLGVSWDTPFVDGLTLDSRWIYTGSAYVDSANALAVPHWNRVDLGAAYAFQVAGKPLVARANLENALGKDYWTAANGYLSISSPRTLSLSL TADF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|