Pseudomonas aeruginosa PAO1, PA3542 (alg44)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0004467	long-chain fatty acid-CoA ligase activity	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	16797016	Reviewed by curator
Biological Process	GO:0042121	alginic acid biosynthetic process	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	16797016	Reviewed by curator
Biological Process	GO:0044010	single-species biofilm formation	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	16797016	Reviewed by curator
Cellular Component	GO:0009276	Gram-negative-bacterium-type cell wall	IDA Inferred from Direct Assay	ECO:0000314 direct assay evidence used in manual assertion	16797016	Reviewed by curator
Biological Process	GO:0050896	response to stimulus	IDA Inferred from Direct Assay	ECO:0000002 direct assay evidence
Biological Process	GO:0042121	alginic acid biosynthetic process	IMP Inferred from Mutant Phenotype	ECO:0000015 mutant phenotype evidence	18524915	Reviewed by curator
Molecular Function	GO:0035438	cyclic-di-GMP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF07238	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Secreted Factors (toxins, enzymes, alginate) Other PAO1 genes in this class Cell wall / LPS / capsule Other PAO1 genes in this class Adaptation, Protection Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
PseudoCyc	PWY-6082	alginate biosynthesis	19.5	ECO:0000250 sequence similarity evidence used in manual assertion	12867747
PseudoCAP		Alginate biosynthesis		ECO:0000037 not_recorded
KEGG	pae02025	Biofilm formation - Pseudomonas aeruginosa	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae00051	Fructose and mannose metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF13437	HlyD family secretion protein	-	-	262	357	1.0E-9
Gene3D	G3DSA:2.40.50.100	-	-	-	198	292	3.9E-5
Gene3D	G3DSA:2.40.10.220	predicted glycosyltransferase like domains	-	-	12	122	1.5E-35
SUPERFAMILY	SSF141371	PilZ domain-like	-	-	10	124	2.35E-10
PANTHER	PTHR30386	MEMBRANE FUSION SUBUNIT OF EMRAB-TOLC MULTIDRUG EFFLUX PUMP	-	-	259	370	2.5E-19
Pfam	PF07238	PilZ domain	IPR009875	PilZ domain	16	115	2.2E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.