Pseudomonas aeruginosa PAO1, PA3477 (rhlR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGCGCGCCTACGCGCCACTGGGAGCCTTGCTGCCATCGTGCGCCGGGCTGGTCCATCCGGGCGGTATCGGCGCCATGAGCCTAGCCTTGGCGGCGGGG GTGCCGCAGGTGCTGCTGCCCTGTGCCCACGACCAGTTCGACAATGCCGAACGGCTGGTCCGGCTCGGCTGCGGGATGCGCCTGGGCGTGCCGTTGCGCG AGCAGGAGTTGCGCGGGGCGCTGTGGCGCTTGCTCGAGGACCCGGCCATGGCGGCGGCCTGTCGGCGTTTCATGGAATTGTCACAACCGCACAGTATCGC TTGCGGTAAAGCGGCCCAGGTGGTCGAACGTTGTCATAGGGAGGGGGATGCTCGATGGCTGAAGGCTGCGTCCTGAACGGTGCTGGCATAACAGATAGGG TTGCCATGATTTTGCCGTATCGGCAAGGCTGCGCGCTTGACAGCGTCATACCCCGGGCCAATTCTGCTGTGATGCATTTTATCGATCAGGGCTTACTGCA
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| DNA Sequence for Gene |
>PA3477
|rhlR
ATGAGGAATGACGGAGGCTTTTTGCTGTGGTGGGACGGTTTGCGTAGCGAGATGCAGCCGATCCACGACAGCCAGGGCGTGTTCGCCGTCCTGGAAAAGG AAGTGCGGCGCCTGGGCTTCGATTACTACGCCTATGGCGTGCGCCACACGATTCCCTTCACCCGGCCGAAGACCGAGGTCCATGGCACCTATCCCAAGGC CTGGCTGGAGCGATACCAGATGCAGAACTACGGGGCCGTGGATCCGGCGATCCTCAACGGCCTGCGCTCCTCGGAAATGGTGGTCTGGAGCGACAGCCTG TTCGACCAGAGCCGGATGCTCTGGAACGAGGCTCGCGATTGGGGCCTCTGTGTCGGCGCGACCTTGCCGATCCGCGCGCCGAACAATTTGCTCAGCGTGC TTTCCGTGGCGCGCGACCAGCAGAACATCTCCAGCTTCGAGCGCGAGGAAATCCGCCTGCGGCTGCGTTGCATGATCGAGTTGCTGACCCAGAAGCTGAC CGACCTGGAGCATCCGATGCTGATGTCCAACCCGGTCTGCCTGAGCCATCGCGAACGCGAGATCCTGCAATGGACCGCCGACGGCAAGAGTTCCGGGGAA ATCGCCATCATCCTGAGCATCTCCGAGAGCACGGTGAACTTCCACCACAAGAACATCCAGAAGAAGTTCGACGCGCCGAACAAGACGCTGGCTGCCGCCT ACGCCGCGGCGCTGGGTCTCATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGCAGGGCGCGCCGGTCGGCGCGCCCTACCAGATCTGGCAGGTTGCCTGCCGTTCATCCTCCTTTAGTCTTCCCCCTCATGTGTGTGCTGGTATGTCC TCCGACTGAGAGGGCCCAGGAGTATCAGGGTAGGGATGCCGCCTTTTTTTTCTCGGCCGGCACGACACGGGGACTTGGTCATGATCGAATTGCTCTCTGA ATCGCTGGAAGGGCTTTCCGCCGCCATGATCGCCGAGCTGGGACGCTACCGGCATCAGGTCTTCATCGAGAAGCTGGGCTGGGACGTGGTCTCCACCTCC AGGGTCCGCGACCAGGAATTCGACCAGTTCGACCATCCGCAAACCCGCTACATCGTCGCCATGAGCCGCCAGGGCATCTGCGGTTGCGCCCGCCTGCTGC CGACGACCGACGCCTACCTGCTCAAGGACGTCTTCGCCTACCTGTGCAGCGAAACCCCGCCGAGCGATCCGTCGGTCTGGGAGCTTTCGCGCTACGCCGC
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| Amino Acid Sequence |
>transcriptional regulator RhlR
MRNDGGFLLWWDGLRSEMQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQMQNYGAVDPAILNGLRSSEMVVWSDSL FDQSRMLWNEARDWGLCVGATLPIRAPNNLLSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQWTADGKSSGE IAIILSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGLI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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