Strain | Pseudomonas aeruginosa BL05 genomic scaffold adgfv-supercont1.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TCAGCGCCGCTGCGAGTGCGTCGGTTGGCGGCCTGGTCGGCAGCAACGCCGGTTCGATCCTGTCGGCGCGCAGCAGCAGTACCGTCAGCGGCGGCGGGCG CAGCCGCATCGGCGGCCTGGTCGGCGAGAACCAGATCCAGGGACGCATCGTTTCGTCCATGTCGGAAGGCACCGTCAGTGGCGACTACTACGTCTCCATG GGCGGGCTGGCCGGCGTCAACCTGGGATCGATCAAGTACTCCGGCGTCAGCGGCAAGATCGACTTCAAGCCTCAGTCCCATTACGGCCAGATCTACGGTG CGCAGGTCGGCGAGAACCGTGGGGTCCTGGGCGGCAACTACGTGATCGGCGAGGCGGCGCTCCTGCCGCCTGCCGGTATCGACTACGGCAACATCTGGTA AGGCCGGCAGGGGAGGTCCCAGGCGGACCTCCCCTGCCGGCCGGGGCCGCTTTCGCCTGGAGTGCGGCCCTCTTCCGCAGGCGCAATCTTGGAGAGTTCC
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DNA Sequence for Gene |
>Q059_00211
ATGAGCATGAGGTTATTTCCTGGCCGCGTTTCCCTGCGCCGCCGGCCTGGCGCGCAGGCTCGGCAGGCGCTCGTTCTCGGTCTCTGCTGCCTGACCGGCG GCCAGGCCTGGGCCCTGAACGACATCGCCCTGAACTGCTCGTTCGGCAATGGCCAGGGCATGCCCTGGCGTGTGGTGAACGAGCTGACCAGCGGCACGGC GAAAGGCACGGTGCTGTTCGCCAGGCCGGTGAGCCTGTTCCTGAGCTACAAGCCCCAGGCTTCCCAGGAGGCGCATGAGCTGGTCCTCGGGGGGAACTGG TCCGGGGTGGGCTATCCGGGGCCCTACGGCACGGTGGCGTCCGACGTCAAAGGCATCGGCTATCGGATCTCGGTGGATGCCCAGGACGGCGTCAAGCGGG TGATTCCGGTCGACAACCAGCCCCATGCGCTGGACAAGCGAGTCACGAGCTTTTCCGGAAGCACGACCAGCGACTACCTACAGGAACTGGTCCTGACGGT CGACCCCGGCGAGTTGCCTGCCGGCGACCTGAAGGTAACCAGCGTATCCGGCAGCGCCACCCTGAGTCTCTGGGCGGTGGACAGGCTGAAGGGCGAAGCG TCCATCGGCAGCGTCCTGGCGGTGCCTGCGGACAACTACCCCACCGGGGTTTGCCGAAAGCCCTATTCGCTGATCGGCCCGGCCTCCATCGCTATCGGCG GCGGTCCCCCGCCGCCGCCGATCCCGAAGAAATGCAAGGTCGAGGTGGGACGGGAAATCAACGTCAAACTGGGTAGCGTCGCGTTGAAGAACTTCCCGCG GGTCAACGACACCTCCACGGAGCGCTCCTTCGATATCTCTCTCAGCGAGTGTGCGGCGCTGGCCAAGCCGGAAATCGCTTTCCGCGACAAGTATGTCTCG GCGCAGCAAGCGGACCCGACGATCCTCAGCTTGAAGAGCGGCGGCGCGGCGGGGTTCGGCATCGTCGTGAAGAACGGCCTGGACCAGCAGCGGATACGTT TCGACGGCACGCCCTACCCGATGCGGCGTGTCGGCGACAGCGCCGACCTCCCGCTGAGTGCCGCCTACATCCGTATCGGCGCGGAGGGCGAATTGAAGGC CGGGGTCGCCGACGGCGCCGCCGAGTTCACGTTTACCTTCCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCGGCGCCGCCGCTCTTTCCCCGGCGTTTCCCGCCCCGCCTCGGGAAGCGCCGTCGGCCGCTTTCGCGCCAGCCCTCGCGAAGGCTCGGCCCCTCACCTC CAGTGGTTGCAGATCGCCGAAGGCGCTCTGCATATCGCTCCGCTGCTCGTCCTGGGTCTCGTGCGCACATGCCATTCCCGCACGCGGAATACCGATATTG CGTATGGGCGGAGGCTTTCTGAGGGATATGCAAGTTTCCTCGGTAGGATTTCGCGCAAATAAACGAACGCTATTTTCCAGGCGATAGTTTCAGGTTGTGG CGGAACTCTTTTTTCAAACTTTTTGCTGCTCTGGCTTGTCCGTTTCGTATTTCATAATTTTTCATAAGTGTCTGCGTAGGCGTTTTTCGGGGGCTGTTTC AAGTGTCTTTGTTGTTAGTTTACGAGGCGAAAAAATAGTAGTTTTACTATATTAAATATCGTCGGTTTCACTAGAAAATACACATGTTCACTTTGAACCG
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Amino Acid Sequence |
>fimbrial protein
MSMRLFPGRVSLRRRPGAQARQALVLGLCCLTGGQAWALNDIALNCSFGNGQGMPWRVVNELTSGTAKGTVLFARPVSLFLSYKPQASQEAHELVLGGNW SGVGYPGPYGTVASDVKGIGYRISVDAQDGVKRVIPVDNQPHALDKRVTSFSGSTTSDYLQELVLTVDPGELPAGDLKVTSVSGSATLSLWAVDRLKGEA SIGSVLAVPADNYPTGVCRKPYSLIGPASIAIGGGPPPPPIPKKCKVEVGREINVKLGSVALKNFPRVNDTSTERSFDISLSECAALAKPEIAFRDKYVS AQQADPTILSLKSGGAAGFGIVVKNGLDQQRIRFDGTPYPMRRVGDSADLPLSAAYIRIGAEGELKAGVADGAAEFTFTFP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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