Pseudomonas aeruginosa PAO1, PA3047

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0042597 periplasmic space
ISS
Inferred from Sequence or Structural Similarity 		ECO:0000250
sequence similarity evidence used in manual assertion		 18266856 Reviewed by curator
Molecular Function GO:0004175 endopeptidase activity
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 25495032 Reviewed by curator
Molecular Function GO:0004185 serine-type carboxypeptidase activity
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 25495032 Reviewed by curator
Biological Process GO:0009252 peptidoglycan biosynthetic process
IDA
Inferred from Direct Assay 		ECO:0000314
direct assay evidence used in manual assertion		 25495032 Reviewed by curator
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30023
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004185 serine-type carboxypeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30023
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Peptideglycan biosynthesis ECO:0000037
not_recorded
KEGG pae00550 Peptidoglycan biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.50.80.20:FF:000002 D-alanyl-D-alanine carboxypeptidase dacB - - 96 163 2.6E-47
PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C 295 317 2.2E-22
Gene3D G3DSA:3.40.710.10 - IPR012338 Beta-lactamase/transpeptidase-like 280 468 9.7E-55
PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C 432 445 2.2E-22
PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C 68 87 2.2E-22
PANTHER PTHR30023 D-ALANYL-D-ALANINE CARBOXYPEPTIDASE IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C 7 474 0.0
NCBIfam TIGR00666 JCVI: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C 62 454 5.3E-65
Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C 30 454 1.5E-86
SUPERFAMILY SSF56601 beta-lactamase/transpeptidase-like IPR012338 Beta-lactamase/transpeptidase-like 27 469 9.4E-92
Gene3D G3DSA:3.50.80.20 - - - 92 163 7.3E-22
PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C 355 369 2.2E-22
PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C 370 384 2.2E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.