Pseudomonas aeruginosa BL12, Q066_01564

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd13835
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:4.10.520.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd13835
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0030527 structural constituent of chromatin
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01727
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR33175 DNA-BINDING PROTEIN HU IPR000119 Histone-like DNA-binding protein 1 94 6.9E-30
Pfam PF00216 Bacterial DNA-binding protein IPR000119 Histone-like DNA-binding protein 4 92 3.5E-31
Hamap MF_00380 Integration host factor subunit alpha [ihfA]. IPR005684 Integration host factor, alpha subunit 2 98 30.539347
Coils Coil Coil - - 7 27 -
NCBIfam TIGR00987 JCVI: integration host factor subunit alpha IPR005684 Integration host factor, alpha subunit 3 97 4.4E-54
FunFam G3DSA:4.10.520.10:FF:000002 Integration host factor subunit alpha - - 2 99 2.2E-55
Gene3D G3DSA:4.10.520.10 - IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily 3 96 2.9E-33
MobiDBLite mobidb-lite consensus disorder prediction - - 54 73 -
PRINTS PR01727 Prokaryotic integration host factor signature IPR000119 Histone-like DNA-binding protein 43 58 3.6E-17
PRINTS PR01727 Prokaryotic integration host factor signature IPR000119 Histone-like DNA-binding protein 61 74 3.6E-17
PRINTS PR01727 Prokaryotic integration host factor signature IPR000119 Histone-like DNA-binding protein 77 91 3.6E-17
CDD cd13835 IHF_A IPR005684 Integration host factor, alpha subunit 5 92 5.32629E-51
SMART SM00411 bhlneu IPR000119 Histone-like DNA-binding protein 4 93 2.0E-41
SUPERFAMILY SSF47729 IHF-like DNA-binding proteins IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily 4 93 2.94E-31

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.