Pseudomonas aeruginosa PAO1, PA2227 (vqsM)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
ATGGGCCCCTCACAGTTTATGAATCAAAGACTTTGGCCCCAACTGGGTGCCGAATGTGAAGGTGCTTGGTTAACAGACGATCGGGGCACAGAGCTAGCAT TCGGTGGGGTGAACCTTTGCCTAAGAGACTTTGCACGCATTGGTCTATTATTTCTTCATGGCGGTCGCAGCCTGACTGGAAGTCAAATTGTAAGTGCTGA GTGGGTCAAGGCATCAACCAAACCTCGGAGTGCTCACTTGCGTCCTGGACGTTACATAGAGGATGGTGAGCCAAATCTTGGGTATGGTTACCAGTGGTGG ATTCCAGAAGGCAAAGAAGGGGAGTTCTTGGCTATCGGAGTGTACGGGCAGTTTATTTATGTAAATCCACTTAGGCGTGTGGTGATTGCAAAGACCTCCG CGTATGTCGACTACAACGTTGACGGCATCCGTATGGAGCATGAGGCACTTGCAGCGTTCAGGGCTATATCAAGAACAGTAGGGGTGAGGTGAATATAGAC
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| DNA Sequence for Gene |
>PA2227
|vqsM
ATGGTGACCGAACACATATTTGATTTTGAATGGCGCCCTCTGCAGAACTATCTTCGTGATCGTGATATCGCAATACCACCCTTTGCGGCAGAACAAGAGT CAAGAAGTGACGCACTTTACAACTGGATAGTCAGCAAGGGGTATTCAGGAAAAGAAGGACTGAATCTTGGAACTTATTACCATATATCTGATTATGGCGT GATAGGATTGGCGTTGCTATGCGCCGAGAACGTAGGTGATATTTTGAAAGTCATCAGGGCCTATGTCAAGTTGTTCAATCGTGATATAGCTAATGTTGGC GTCAAGCCTAGGGAGAATTACGAAGTAGAAATCCATATTTCAGTTAACTTTAAGCCAGAGTGGAATGACGCATCCCGTCAGTTTCATGTAAATGTTATAG CCTCTGCAACCTACAAGCTCATTATGGATCTGTTAGGTAATGACTTTCCCATCTCTGCATTGACAGTGCCTGTGCACGGCGCAGATAAAACAATATATGA AGGTTTCTTTTCTTTGCCTGTGAAGCATGAAGGAAATGACATAATATTTAGCTTTCCAGCTCATCAGTTGAATAGAACACTGGCGACTGCCAATCCGGCG GTATTTCAGTCGGCCCTGACTATGGCAGGTGAGAGTTTCAATGCTCTGTTGGAAGTAGAGATGGGAGGGCTCCGTCAGCGAATCGAGTTATTCCTTGATT CCATACCAGATCAATACCCTAGCTTGGTGACTACCGCAAAGTATTTACGCATGAATGAGCGGACGGTAAGACGTCGCTTGGCGGACGAGGGCTGCACTTA TCGCCAGATTGTAGATAAGGCCCGCAAAGAACGAGCAATTGCACTGCTACTGAATTCATCGATACCAGTTGATCGTATTAGCGATATTCTGGGGTACTCG GAAACAGCGAGTTTTAGACATGCATTCAGACGTTGGACCGGGCAGTCTACTACAGAATTCAGAAACAGTTTCCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCTATCTAGTTTGAGATTGGGCAAGGAGCATCTTATGAATTTCAATAATCGTAATAATCAGATTCTGTCTATGATTGCCGAGACTCAGTTCGATGCTTAC GTTTTGGGCTATATTGCGAAGGCGCGGACAATCTCGATTGCTGATGATTCCCTTCGCATTGAGGCCGAAGGATCAGCAATGCTTGCTGGACTAATTAGCG ACTCATGCAGGAAGCGTCGAACTCAAAAGAATCCATTTCCATATTTGCTACTTCAGATCGCGCACGAAGCCTTGGATCGAATCAGGCTTAATCTCGCAAA TATTCGTAATATATCTAGCGCTGATGCATTGTATAAAGAGCTGCTTAGTCAGGCTGCGTGGGACGCATCTGTTGCTATGGATAATATATCGGAATTTGTC GAGCCAGATCAGGGTGGCGTCAGAGTAATCGAGCGACTTGTCGAGTTTGCACATAATTCGGGTATTGCAGAAGGTCAAAACCTGGCGCTGGAAGCTCTTG
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| Amino Acid Sequence |
>AraC-type transcriptional regulator VqsM
MVTEHIFDFEWRPLQNYLRDRDIAIPPFAAEQESRSDALYNWIVSKGYSGKEGLNLGTYYHISDYGVIGLALLCAENVGDILKVIRAYVKLFNRDIANVG VKPRENYEVEIHISVNFKPEWNDASRQFHVNVIASATYKLIMDLLGNDFPISALTVPVHGADKTIYEGFFSLPVKHEGNDIIFSFPAHQLNRTLATANPA VFQSALTMAGESFNALLEVEMGGLRQRIELFLDSIPDQYPSLVTTAKYLRMNERTVRRRLADEGCTYRQIVDKARKERAIALLLNSSIPVDRISDILGYS ETASFRHAFRRWTGQSTTEFRNSFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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