Strain | Pseudomonas aeruginosa BL19 genomic scaffold adgeJ-supercont1.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CTGCTCGCCCGCGAACAGCAGGTCGACCCGCTCAGCCTGACCGGCTCCTACGCCGGCGCCATGGGCCTGCCGCAATTCATGCCGAGCAGCTTCCGCGCCT ACGCGGTGGACTTCGACGGCGATGGCCACATCAATATCTGGAGCGACCCGACCGACGCCATCGGTAGCGTCGCCAGCTACTTCAAGCAGCACGGCTGGGT CACCGGCGAGCCGGTGGTCTCGGTGGCCGAGATCAACGACGAGAGCGCCGAGAGCGCGGTGACCAGGGGCGTCGACCCGACCATGAGCCTGGGTGAGCTG CGTGCCCGCGGCTGGCGCACCCACGATGCGCTGCGCGACGACCAGAAGGTCACGGCGATGCGTTTCGTCGGCGACAAGGGCATCGAGTATTGGGTCGGTT TGCCGAACTTCTACGTGATCACCCGCTATAATCGCAGCGCCATGTATGCCATGGCGGTTTATCAGCTGGCGGGCGAGATTGCCCGCGCGCGAGGTGCCCA
|
|
DNA Sequence for Gene |
>Q073_00287
TTGAGCAAGCGTGTCCGCTCCTCCCTGATCCTGCCCGCCGTCTGCGGCCTCGGGCTGGCGGCCGTGCTGTTGAGCAGTTGCTCCAGCAAGGCGCCCCAGC AGCCGGCCAGGCAGGTGGGCATTTCCGGGCCGGGCGACTATTCCCGTCCGCATCGCGACGGCGCCCCCTGGTGGGACGTCGACGTGTCGCGGATCCCCGA TGCGGTGCCGATGCCGCACAACGGTTCGGTGAAGGCCAACCCCTACACCGTGCTGGGCAAGACCTACTATCCGATGAACGATGCGCGGGCCTACCGGATG GTCGGCACCGCGTCCTGGTACGGCACCAAGTTCCACGGCCAGGCCACCGCCAACGGCGAGACCTACGACCTCTACGGCATGACCGCCGCGCACAAGACCC TGCCGTTGCCGAGCTACGTGCGGGTGACCAACCTGGACAACGGCAAGAGCGTGATCGTCCGCGTCAACGACCGCGGCCCGTTCTATTCCGACCGGGTCAT CGACCTGTCCTTCGCCGCGGCGAAGAAGCTCGGCTATGCCGAGACCGGCACCGCGCGGGTCAAGGTCGAAGGCATCGACCCGGTGCAGTGGTGGGCCCAG CGCGGCCGGCCGGCACCGATGGTCCTGGCGCAGCCCAAGCAGGCGGTGGCCCAGGCCGCTCCCGCCGCGGCGCAGACGCAGGCGGTGGCGATGGCCCAGC CGATCGAGACCTACACTCCGCCGCCGGCGCAGCACGCGGCCGCCGTGCTGCCGGTGCAGATCGACTCAAAAAAAAACGCTTCATTACCAGCCGATGGCCT GTATCTCCAGGTGGGCGCCTTCGCCAACCCGGATGCGGCGGAGCTGCTGAAGGCCAAGCTGAGCGGCGTGACGGCTGCGCCGGTGTTTATCAGCTCGGTC GTGCGCAACCAGCAGATTCTGCACCGGGTGCGGCTGGGACCAATCGGTTCGGCGGACGAGGTTAGCCGCACCCAGGACAGCATCCGCGTGGCCAACCTTG GCCAGCCGACGCTGGTACGCCCCGACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
GCGCCTACTCACGCAGGGAATTCCCGCAAGGGATTGTTTGACCATTGGTAGAACCAGAGAGACGGATGAACATCACCACTATCGCGAAACGCTTGTCACT GCTTGTCCTGTTCATCGCCCCTACGGCTGGCTGGGCTGCTGAATCCATGGTTCCGGCGCCGCCGCAACTGGCCGCCAAGTCGTACGTCCTGATGGACGGC GAGAGCGGCCAGGTTCTGGTCGAGAACAACGGCGACCAGCGCCTGCCGCCGGCCAGCCTGACCAAACTGATGACCGCCTACATCGCCACCAAGGAGATCG AGGCCGGCCGCATCGGCGAGAACGACCTGGTCACCGTCAGCGAACATGCCTGGCGCACCGGCGGTTCGCGGATGTTCATCAAGGTCGGCAGCCAGGTATC GGTGAGCGACCTGCTGCATGGCATCATCATCCAGTCCGGCAACGACGCCAGCGTCGCCCTGGCCGAGCATATCGCCGGCAGCGAAGACGCCTTCGCCGAC
|
|
Amino Acid Sequence |
>RlpA-like lipoprotein
MSKRVRSSLILPAVCGLGLAAVLLSSCSSKAPQQPARQVGISGPGDYSRPHRDGAPWWDVDVSRIPDAVPMPHNGSVKANPYTVLGKTYYPMNDARAYRM VGTASWYGTKFHGQATANGETYDLYGMTAAHKTLPLPSYVRVTNLDNGKSVIVRVNDRGPFYSDRVIDLSFAAAKKLGYAETGTARVKVEGIDPVQWWAQ RGRPAPMVLAQPKQAVAQAAPAAAQTQAVAMAQPIETYTPPPAQHAAAVLPVQIDSKKNASLPADGLYLQVGAFANPDAAELLKAKLSGVTAAPVFISSV VRNQQILHRVRLGPIGSADEVSRTQDSIRVANLGQPTLVRPD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|