Strain | Pseudomonas aeruginosa BL22 genomic scaffold adgff-supercont1.3, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GATCTCGCGCCCGGGATGGAAGATCTGCGACAGCACCACGCAGCCTTCGGCGTGGCAGGCCTCGGCGACCCGCCGGTAGCCGGGGATGCAGGCATCGTCG GTGGCCATCAGCACGTGCGAGGTGTAGCGCGCGCTGTCGTGGACCCCCGCCACCTGCATGACGATCAGTCCGGCGCCGCCGCGGGCCCGGGCGCGGTGAT AGGCGACGAGTGGCTCGTTGACCAGGTTGTCGGTAGGCATCGACGTGTCGTGGCCGCTCGACATGATGCGGTTTTTCAGGCGTTTGCCCCGGATTTCCAG GGGGCTGAACAGGTGCGGGAAATTCACGGTTGGCGTCCTTCTTGTTGTTCTCGCGGCGCGCTTCAGAAACAGGATATGAATTTACCATCAGTAAAAAATC AACTTGTTTTTTTAAAATCGACTGGATAGTTTCTGTCCCGTGGCCGCTTCCCGGCGGCTCGCTGCGATCCACTCCACAACAAGAACAAGAGGAGACGCAC
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DNA Sequence for Gene |
>Q076_04007
ATGAACCGTTCCTTTCCATTGCGCCGCGCGGCCAGCGCCCGTCCGCATCCGGTTTTTCCTTGCCGCGTCCTGCTCGGTGCCGTCCTGCTGGCGTTCGGCG GCCTCGCGCCAGTCCAGGCCGATGATGGCCTGGTGGTGGTCGGCTACGGCGGCGCCGGACAGAAGGCCCAGGAGGTGGCGTTCTTCCAGCCGTTCACGCA GCAGACCGGGATTCCCGTAGTGCAGAGCGAGTACAACGGCGAGATGGCCCGGATCAAGGTGATGGCCGACACCGGTCACGCCGACTGGGACCTGGTCCAG GTCGAGGGGCCGGATCTGGCGCGCGGTTGCGACGACGGCCTGTTCGAGCGTCTGGACTGGCAGGCCATCGGCGGCAAGCAGCAGTTGATCGCCAATGCCG CCCAGGAATGCGGTTCCGCCGCGCTGGTCTGGGGCGTGGCGATCGGCTACGACGCCGACCGGCTGCAACAGCCGCCGGCGTCCTGGGCCGACTTCTGGGA CGTCCAGCGCTTCCCCGGCAAGCGCGGCCTGCGCAAGCGGGCGATCTACAACCTGGAGTTCGCCCTGCTCGCCGACGGCGTGCCACGCGAGCAGGTCTAT CCGCTGCTGGCGACCCGCGCCGGCGCCGACCGTGCCTTCGCCAAGCTGGGCCAGCTCAAGCCCTACATCCAGTGGTGGGAGGCGGGAGCGCAGCCGGCGC AGTGGCTGGCCGCCGGCGACGTGGTGATGACGTCCACCTACACCGGGCGCATCGCCGACGCCCACCGCGCGGGGCGCAACCTGGCCCTGGTATGGCCGGG CAGCCTGTACGGCATGGACTACTGGGCGGTGGTCAAGGGTTCGAAGCGCGGCGCCGAGGCGCGTCGCTTCATCGCCTTCGCCAATGCCCCGGATGCCCAG GTGCGCTACGTCGAGAACATTCCCTACGGGCCGACCAACCGCCAGGCCGCCCAGCGCCTGCCCGCGCAACTGGCGAGCTGGGTGCCGACCGCGCCGGCGA ACCTGGAGCAGGGCCTGGCGATGGACGACGAATTCTGGGTCGAGCATGGCGAGGAGCTGGAGGAGCGCTTCAACGCCTGGGCCAGCCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GACGGGCGCCACGTAACCTGCGATCATCGGGGCTGCCCGCCGGTGGTCGCGGGCGACGAGCAGGAGCCGCGAAAGGATGAACCAGGAAGTGCGCTTTTCC CGTCTGGAACCAGAGCAGCGCAAGGCGCTGCTGATCGAGGCGACCCTGGCCTGCCTGAAGCGGCATGGCTTCCAGGGCGCCTCGGTGCGCAAGATCTGCG CCGAGGCCGGGGTATCGGTGGGCCTGATCAATCACCACTACGATGGCAAGGACGCGCTGGTGGCCGAGGCCTACCTGGCGGTCACCGGACGCGTCATGCG CCTGCTCCGCGGTGCCATCGACACCGCGCCGGGCGGCGCCCGCCCGCGGCTCTCGGCGTTCTTCGAGGCATCCTTCTCCGCCGAGCTGCTCGATCCGCAA TTGCTCGACGCCTGGCTGGCGTTCTGGGGTGCGGTGGGCAGCATCGAAGCGATCGGGCGGGTCCACGACCATTCCTATGGCGAGTACCGGGCGCTGCTGG
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Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MNRSFPLRRAASARPHPVFPCRVLLGAVLLAFGGLAPVQADDGLVVVGYGGAGQKAQEVAFFQPFTQQTGIPVVQSEYNGEMARIKVMADTGHADWDLVQ VEGPDLARGCDDGLFERLDWQAIGGKQQLIANAAQECGSAALVWGVAIGYDADRLQQPPASWADFWDVQRFPGKRGLRKRAIYNLEFALLADGVPREQVY PLLATRAGADRAFAKLGQLKPYIQWWEAGAQPAQWLAAGDVVMTSTYTGRIADAHRAGRNLALVWPGSLYGMDYWAVVKGSKRGAEARRFIAFANAPDAQ VRYVENIPYGPTNRQAAQRLPAQLASWVPTAPANLEQGLAMDDEFWVEHGEELEERFNAWASQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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