Pseudomonas aeruginosa PAO1, PA1698 (popN)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PAO1 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGCTCTCCGACCGCCACGCGATGCATGCCGCCGGTAGGGCTGACTTCGGTGTTGGAGGAAACCCCGAGCATCTCGCCGAGCGGGGTGAGCAGCGCCTG GTGCTGCTGGAAGCCGATGACCTCGGCGAGCAGCGCCAGGCTCTGGTCGGGATTGCGCAACTGGCAGAGTTCGCCGATGCGCACGCCGGGCACCACGGCC TTGAGCAGGGTTCCGGTGACCTGGGTGACCCGCCCGCGGATCTGGATCGGCCGGCAGCCTTCGATGGCGTGGCGCATCCGGACGATGAGAGGAGAGAGAG GCGCGGGCATGGCGGATCGGTTCGGCTGGAGTCGGCGCGCACTATAGAGAAAGCCTCGCGCGACGAATTTCAGTGCCAGCCGGGAGTTTTTAGAAATCGG TTGCCGCCGCGGCTAAAAAAAACCGGCCGATATTGGCATCGGCGGCACCGGGCCGGTTCCTATACTGCGCCGCCTTTGCAGACCAGGAACCACAGCCACG
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| DNA Sequence for Gene |
>PA1698
|popN
ATGGACATCCTCCAGAGTTCCTCCGCCGCGCCCCTCGCGCCGCGGGAAGCGGCCAACGCCCCCGCGCAGCAGGCTGGCGGCAGCTTTCAGGGCGAGCGCG TCCACTACGTTTCCGTTTCGCAGTCGCTGGCCGATGCCGCGGAAGAGCTGACCTTCGCCTTTTCCGAGCGCGCCGAGAAATCCCTGGCCAAGCGCCGCCT GAGCGACGCCCATGCGCGCCTGAGCGAAGTCCAGGCCATGCTGCAGGAGTACTGGAAGCGCATTCCGGACCTGGAAAGCCAGCAGAAGCTCGAGGCGCTG ATCGCCCACCTGGGCAGCGGCCAACTGAGCAGCCTGGCGCAGCTCAGCGCTTACCTGGAGGGCTTCTCCAGCGAGATCAGCCAGCGCTTCCTGGCGCTGT CGCGGGCGCGCGACGTCCTGGCCGGGCGGCCGGAGGCGCGGGCGATGCTGGCGCTGGTCGACCAGGCGTTGCTGCGGATGGCCGACGAGCAGGGCCTGGA GATCGAACTCGGCCTGCGCATCGAGCCGCTGGCCGCCGAGGCTTCCGCCGCCGGTGTCGGCGATATCCAGGCGCTGCGCGATACCTACCGTGACGCGGTA CTTGACTACCGGGGCCTGTCGGCGGCCTGGCAGGACATCCAGGCGCGCTTCGCCGCGACGCCGCTGGAGCGGGTCGTGGCCTTCCTGCAGAAAGCCCTGA GCGCCGACCTGGACAGTCAGTCGAGCCGGCTCGATCCGGTGAAGCTGGAGCGGGTCATGAGCGACATGCACAAGCTGCGCGTGCTCGGCGGCCTGGCGGA GCAGGTGGGGGCGCTCTGGCAGGTGCTGGTGACAGGGGAGCGGGGCCATGGCATACGGGCCTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATTGACCGGCGCAGTCATCGCCTTGCTCGAGAAGCGCTGGGTCGGCGTCGCCGAGGTGCAGGCGTTGCTCGAGCCGTTGCCGCTGGCCGACGTCGCCCGG CAGATCCATTTCTTCCGCGAACTGAAGCGTCTCTACCGCCTGTTGCCGGTCGAAGTGTTCGGCGACGACGAGCAGCGCCAGAATCTTTTGAATGCCTGCC AGATGGCACTCGACCTGGCGATCGAGCGCGAAGAGGAGCAGCAGCATGGACTGGGTTGAGCTGGCCGTCGCGCAGTTCTGCCAGGACCTGCGGGTGAGCG TACCGGCGCCGCTGGCGCGCGTGGTGCAACTGGATTTCGAGGACAGCGGCACCTTGCAGCTGGAACGCCATGGCGAACAGTTGTCGCTCTGGCTGGCCTG TGACCTGGCCTGGCACCAGGCCTATCGCGGAACGCTGCGGGCGTTGCGCCTGTGCCATGCGCGCGCGGCCGGGAGCCTGCCGCTGCGTTGCGCCTGGAGC
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| Amino Acid Sequence |
>Type III secretion outer membrane protein PopN precursor
MDILQSSSAAPLAPREAANAPAQQAGGSFQGERVHYVSVSQSLADAAEELTFAFSERAEKSLAKRRLSDAHARLSEVQAMLQEYWKRIPDLESQQKLEAL IAHLGSGQLSSLAQLSAYLEGFSSEISQRFLALSRARDVLAGRPEARAMLALVDQALLRMADEQGLEIELGLRIEPLAAEASAAGVGDIQALRDTYRDAV LDYRGLSAAWQDIQARFAATPLERVVAFLQKALSADLDSQSSRLDPVKLERVMSDMHKLRVLGGLAEQVGALWQVLVTGERGHGIRAF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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