Pseudomonas aeruginosa PAO1, PA1529 (lig)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006259 DNA metabolic process
ISS
Inferred from Sequence or Structural Similarity
ECO:0000250
sequence similarity evidence used in manual assertion
15583169 Reviewed by curator
Molecular Function GO:0003911 DNA ligase (NAD+) activity
ISS
Inferred from Sequence or Structural Similarity
ECO:0000250
sequence similarity evidence used in manual assertion
15583169 Reviewed by curator
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03120
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03120
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003911 DNA ligase (NAD+) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03120
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae03420 Nucleotide excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 68 327 2.9E-98
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 618 704 7.41E-14
FunFam G3DSA:3.30.470.30:FF:000001 DNA ligase - - 68 327 4.0E-107
Gene3D G3DSA:3.40.50.10190 BRCT domain IPR036420 BRCT domain superfamily 702 788 2.0E-23
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 416 603 1.37E-52
Gene3D G3DSA:6.20.10.30 - - - 403 453 2.4E-13
FunFam G3DSA:1.10.287.610:FF:000002 DNA ligase - - 2 67 2.6E-29
FunFam G3DSA:1.10.150.20:FF:000007 DNA ligase - - 454 529 3.8E-30
Gene3D G3DSA:1.10.150.20 - - - 454 528 5.1E-28
SMART SM00532 ligaN3 IPR013840 NAD-dependent DNA ligase, N-terminal 6 472 0.0
Pfam PF00533 BRCA1 C Terminus (BRCT) domain IPR001357 BRCT domain 713 787 2.2E-11
FunFam G3DSA:3.40.50.10190:FF:000069 DNA ligase - - 706 789 8.8E-42
FunFam G3DSA:2.40.50.140:FF:000012 DNA ligase - - 329 402 9.4E-35
CDD cd00114 LIGANc IPR013839 NAD-dependent DNA ligase, adenylation 9 329 0.0
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 620 792 2.3E-31
SMART SM00292 BRCT_7 IPR001357 BRCT domain 713 790 6.3E-9
Pfam PF01653 NAD-dependent DNA ligase adenylation domain IPR013839 NAD-dependent DNA ligase, adenylation 7 330 7.2E-124
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 3 328 2.16E-118
SUPERFAMILY SSF52113 BRCT domain IPR036420 BRCT domain superfamily 714 788 5.23E-17
Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type 419 458 1.4E-13
Gene3D G3DSA:1.10.287.610 Helix hairpin bin - - 1 67 8.2E-29
PANTHER PTHR23389 CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 - - 16 770 2.6E-55
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 1 622 0.0
Hamap MF_01588 DNA ligase [ligA]. IPR001679 NAD-dependent DNA ligase 5 787 53.010704
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 534 597 7.3E-21
Gene3D G3DSA:1.10.150.20 - - - 529 611 1.9E-24
Pfam PF03120 NAD-dependent DNA ligase OB-fold domain IPR004150 NAD-dependent DNA ligase, OB-fold 334 410 6.7E-35
FunFam G3DSA:1.10.150.20:FF:000006 DNA ligase - - 530 609 3.4E-25
CDD cd17748 BRCT_DNA_ligase_like - - 716 786 2.33857E-24
Gene3D G3DSA:1.10.150.20 - - - 624 701 1.3E-11
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 330 412 3.26E-28
NCBIfam TIGR00575 JCVI: DNA ligase (NAD(+)) LigA IPR001679 NAD-dependent DNA ligase 14 617 0.0
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 632 687 2.4E-8
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 329 402 3.3E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.