Pseudomonas aeruginosa M8A.4, Q083_01760
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa M8A.4 genomic scaffold adgfJ-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGATCGGCAACGCCATCGAGAAGAAGGAGCTGCCCCTGGTGGTCGGCATCCTCGCCGACCTCTCCGGCAAGCCGGATACCCCGCCGGCGAAGCTGGTC GAACGGCGTTTCGTCGACATCGACCGCGACAACTTCAACGAGATCCTCTCCTCCATCTCTCCCCGCGCCACCCTGCAGGTCGACAACACCATCAGCGGCG ACGACAGCAAGCTGAACGTCGAGCTGCGCTTCAACCACATCGAGGACTTCGACCCGGTCAACCTGGTGAAGCAGGTGGTCCCGTTGCGTCGCCTGTTCGA AGCGCGCCAGCGCCTGCGCGACCTGCTGACCAAGCTCGACGGCAACGACGACCTCGACCAGTTGCTGCAGGACGTGGTGGCCAACACCGAAGGCCTGCAG GAAATCAAAGCGGCCCGCCCGGAAGCCGAAGCGGCCCCGGCCGGCGACAGCGAACCCCCGGCCGACCAGCCGGCCTGACCCTCTTCCCGGAGAAGCCGCC
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| DNA Sequence for Gene |
>Q083_01760
ATGCCCAAGTCATCCGCCGCCGAACAGTCCGGCGAGAGTTCGACCCAGACCCTGTCCCTGCTCGACGAGATCATCGCCAAGGGCCGCATGGCCCACGACG ACAGCCAGCAGGACTATGCCCGCGACATGCTCGCGGAATTCGCCACCCAGGTCCTCGACGAGGGCATGGCCGTCGACAAGGACACCGTGGCGATGATCAA CGACCGCATCAGCCAGATCGATGCGCTGATCAGCGACCAGCTCAACCAGATCATCCACCACCCCGAGTTGCAGAAGCTGGAAGCCTCCTGGCGCGGCCTG CACCAACTGGTGAGCAACACCGAGACCAGCGCGCGGCTCAAGCTGCGCCTGCTGAACGTCGGCAAGAACGAACTGCAGAACGACCTGGAGAAGGCGGTCG AGTTCGACCAGAGCGCACTGTTCAAGAAGATCTACGAAGAGGAATACGGCACCTTCGGCGGACACCCCTTCAGCCTGCTGATCGGCGACTTCACCTTCGG TCGCCATCCGCAGGACATCGGCCTGCTGGAGAAGCTGTCGAACGTCGCCGCGGCTGCCCACGCGCCGTTCATCGCCGCCGCCAGCCCACGCCTGTTCGAC ATGAACAGCTTCACCGAACTGGCCGTGCCGCGCGACCTGACCAAGATCTTCGAGAGCCTGGAGCTGATCAAGTGGCGCGCCTTCCGCGAGAGCGAGGACT CGCGCTACGTGTCGCTGGTGCTGCCGAACTTCCTCCTGCGCCTGCCCTACGGCCCGGAGACGCGACCGGTGGAAGGCATGAACTATGTCGAGGACGTCAA CGGCACCGACCACTCCAAGTACCTCTGGGGCAACGCCGCCTGGGTCCTGGCGCAGCGCATCACCGAGGCCTTCGCCAAGTACGGCTGGTGCGCGGCGATC CGCGGCGCGGAAGGCGGCGGCGCGGTCGAGGGCCTACCGGCGCACACGTTCCGCACCAGCTCCGGCGACCTGTCGCTGAAGTGCCCGACCGAGGTGGCGA TCACCGACCGCCGCGAGAAGGAACTCAACGATCTCGGCTTCATTTCCCTGTGCCACAAGAAGAACAGCGACGTGGCGGTGTTCTTCGGCGGCCAGACCAC CAACAAGGCCAGGCTCTACAACACCAACGAGGCCAACGCCAACGCGCGCCTGTCGGCGATGCTGCCGTACGTGCTGGCGGCATCGCGCTTCGCCCACTAC CTGAAGGTGATCATGCGCGACAAGGTCGGCAGCTTCATGACCCGCGACAACGTGCAGACCTACCTGAACAACTGGATCGCCGACTACGTGCTGATCAACG ACAACGCACCGCAGGAAATCAAGGCGCAGTACCCGCTGCGCGAGGCGCGGGTAGATGTCAGCGAGGTGGCCGGCAAACCGGGGGCCTACCGCGCCACGGT GTTCCTCCGGCCGCACTTCCAGCTCGAGGAACTCAGCGCGTCGATCCGCCTGGTCGCCAACCTGCCGCCGCCGGTAGCGGCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCCGCCCCCGCCGGCAGCGCCGGCGGGGCGCCCTTCCCGTTCCAGACAGCCCCTCTCCAGGAGTCAGATGCGATGGATGCGATCATTCTCGATTTCGGC AGCGACATCAAAGGCGACAGCCTGCTCGTCGGCTACGAAAACAAGATCGAAATCATGTCCTACAGCCACAACGTGGCGATGCAGGTCACCAACGACGTCA GCAACTCGGAGCGCACCTCCGGCAAACCCCACGTCGGCGAATTCACCCTCACCAAGTTCATCGACACCTCGACCCCGACCCTCAACGAGTATTGCTGCGC CGGCAAGCCGATCGCCGAGGCGACCATCACCATCGGCCGCAACGCCGCCGAGGGCAACGGGCAGATCATGCCCTTCATCGTCTACACCCTGAACAACGTG GTGCTCTCCAACGTCAGCGTCAGCGGCGGCGCCGGCGGCAAGCCGGTGGAGACCCTGTCGCTGAACTTCACCAAGATCAAGTGGGAGCTGACCGCGCAGA
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| Amino Acid Sequence |
>EvpB family type VI secretion protein
MPKSSAAEQSGESSTQTLSLLDEIIAKGRMAHDDSQQDYARDMLAEFATQVLDEGMAVDKDTVAMINDRISQIDALISDQLNQIIHHPELQKLEASWRGL HQLVSNTETSARLKLRLLNVGKNELQNDLEKAVEFDQSALFKKIYEEEYGTFGGHPFSLLIGDFTFGRHPQDIGLLEKLSNVAAAAHAPFIAAASPRLFD MNSFTELAVPRDLTKIFESLELIKWRAFRESEDSRYVSLVLPNFLLRLPYGPETRPVEGMNYVEDVNGTDHSKYLWGNAAWVLAQRITEAFAKYGWCAAI RGAEGGGAVEGLPAHTFRTSSGDLSLKCPTEVAITDRREKELNDLGFISLCHKKNSDVAVFFGGQTTNKARLYNTNEANANARLSAMLPYVLAASRFAHY LKVIMRDKVGSFMTRDNVQTYLNNWIADYVLINDNAPQEIKAQYPLREARVDVSEVAGKPGAYRATVFLRPHFQLEELSASIRLVANLPPPVAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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