Pseudomonas aeruginosa C23, Q086_04384
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa C23 genomic scaffold adggj-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAGGAGCAGGGCTTTGGCGTCCATGTCGGGGTTCCGCTGGGGATGGAAAGGGCATCATGGCTGAGGTGGCTTTATTCGTCGAACGATGGCTGGCCCTGC CGGTAGATCGGCCAGGACTTCATGCGCTGCGGAAACGGCCTGACCAAGTGCAGCGGCTTGCAATCAAAAACGCTGGGCTCGCAATCAGCGTGGTTTTGTC CGGAAGCTCGCGAAGGGGCGGCATGGATGAATTTTGAAAGTGGGAGTTCGTTAATGAACCGAAGGTATGCGGCTTCCGTGACTGGCCGGGGTAGATGAGG TGTGCGTTAAGGAAATGACCGTTTGACGCAGGCGCGATTATAAGAGGTGAGAGAGCGCACCTTCTGGATCATCTAAACACGGGATATTGAAGTTGATTGC AGTGTATTGCCGATGCATTGGGGCTTATTGACTGGGAGAGGGTTCTCGAGGTGGGAGTCGCTCAATACATTACACTTTCAAATTAATGTAGGGGCGATCT
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| DNA Sequence for Gene |
>Q086_04384
ATGGCTGTCAATGATTACGAACCTGGTTCGATGGTTATTACACATGTGCAGGGTGGTGGGCGTGACATAATCCAGTATATTCCTGCTCGATCAAGCTACG GTACTCCACCATTTGTCCCACCAGGACCAAGTCCGTATGTCGGTACTGGAATGCAGGAGTACAGGAAGCTAAGAAGTACGCTTGATAAGTCCCATTCAGA GCTCAAGAAAAACCTGAAAAATGAAACCCTGAAGGAGGTTGATGAACTCAAGAATGAAGCGGGGTTGCCAGGTAAAGCGGTCAGTGCCAATGACATCCGC GATGAAAAGAGTATCGTTGATGCACTCATGGATGCCAAAGCAAAATCGCTAAAGGTCATTGAGGATCGCCCGGCCAATCTTTATACGGCTTCAGACTTTC CTCAGAAGTCAGAGTCGATGTACCAGAGTCAGTTGCTGGCCAGCCGAAAATTCTATGGAGAGTTCCTGGATCGCCATATGAGTGAGCTGGCCAAAGCGTA CAGCGCCGATATCTATAAGGAGCAAATCGCTATCTTGAAACAAACGTCTCAAGAGCTGGAGAATAAAGCCCGGTCATTGGAAGCAGAAGCCCAGCGAGCC GCTGCTGAGGTGGAGGCGGACTACAAGGCCAGGAAGGCAAATGTCGAGAAAAAAGTGCAGTCCGAGCTTGACCAGGCTGGGAATGCTTTGCCTCAACTGA CCAATCCAACGCCAGAGCAGTGGCTTGAACGCGCTACTCAACTGGTTACGCAGGCGATCGCCAATAAGAAGAAATTGCAGACTGCAAACAATGCCTTGAT TGCCAAGGCACCCAATGCACTGGAGAAACAAAAGGCAACCTACAACGCCGATCTCCTAGTGGATGAAATCGCCAGCCTGCAAGCCCGGCTGGACAAGCTG AACGCCGAAACGGCAAGGCGCAAGGAAATCGCTCGTCAAGCGGCGATCAGGGCTGCCAATACTTATGCCATGCCAGCCAATGGCAGCGTTGTCGCCACCG CCGCAGGCCGGGGTCTGATCCAGGTCGCACAAGGCGCCGCATCCCTTGCTCAAGCGATCTCCGATGCGATTGCCGTCCTGGGCCGGGTCTTGGCTTCAGC ACCCTCGGTGATGGCCGTGGGCTTTGCCAGTCTGACCTACTCCTCCCGGACTGCCGAGCAATGGCAGGACCAAACGCCCGATAGCGTTCGTTACGCCCTG GGCATGGATGCCGCTAAATTGGGGCTTCCCCCAAGCGTAAACCTGAACGCGGTTGCAAAAGCCAGCGGTACCGTCGATCTGCCGATGCGCCTGACCAACG AGGCACGAGGCAACACGACGACCCTTTCGGTGGTCAGCACCGATGGTGTGAGCGTTCCGAAAGCCGTTCCGGTCCGGATGGCGGCCTACAATGCCACGAC AGGCCTGTACGAGGTTACGGTTCCCTCTACGACCGCAGAAGCGCCGCCACTGATCCTGACCTGGACGCCGGCGAGTCCTCCAGGAAACCAGAACCCTTCG AGTACCACTCCGGTCGTACCGAAGCCGGTGCCGGTATATGAGGGGGTGACCCTCACACCGTTGAAGACCAAGCCGGAGTCCTATCCGGGAGTGCTACTGG ACCTAAACGATCTGATCGTGATTTTCCCGGCGGATTCTGGAGTCAAACCTGTTTATGTAATGCTCAGTAGTCCTCTTGATAGTGGTATCTTCACACGGAG GCAACTACAGAAAAAATTTGATAGCCACAAATATGATTTTGGGCTGGGTGAAAAAAAGCGCCAACAATGGAACGCTTGCAGAGTTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGATAAAATTCTTGAGCACCTTGCTGATCCTGCAACCGTAGAAAAAGGGACTTACCACTCCGAAGTAAAATCAAAAGTACATTACAATGCCAGGACTAAT ATTGTTGTTATCATTGGAGAGGATGGGATGTTTGTTTCTGGGTGGAGGATTGAGCCTGGCACGGATCAATACAATTTTTACATGAAAAATGAGGTGCTTT AAGATGAGCATGGAAATGATAGATATTGCAAAGAAGCTATTAGCCTCATCGATTGACGGGAAAACCTTCAGCGAAGAATTTTTTAAGACTTGGAGGTCCG AGCGCGATTCAGGGGTGCTGGCCCAAGATGATGCATCGCTTGGGAGATGCTTGAGTTTAATGTTTGGTCTGGCCGACAGCTTTACCGAAGGAAAGAAAGA GCGCCCAGGTGAACTTACAGAGGGTGAGCTTAAAATAGCGCTGAGTGATCTATTGAAAGAATATAAATACATATAATAAGCCGAACTTTAGTAGGTGTAG
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| Amino Acid Sequence |
>pyocin-S2
MAVNDYEPGSMVITHVQGGGRDIIQYIPARSSYGTPPFVPPGPSPYVGTGMQEYRKLRSTLDKSHSELKKNLKNETLKEVDELKNEAGLPGKAVSANDIR DEKSIVDALMDAKAKSLKVIEDRPANLYTASDFPQKSESMYQSQLLASRKFYGEFLDRHMSELAKAYSADIYKEQIAILKQTSQELENKARSLEAEAQRA AAEVEADYKARKANVEKKVQSELDQAGNALPQLTNPTPEQWLERATQLVTQAIANKKKLQTANNALIAKAPNALEKQKATYNADLLVDEIASLQARLDKL NAETARRKEIARQAAIRAANTYAMPANGSVVATAAGRGLIQVAQGAASLAQAISDAIAVLGRVLASAPSVMAVGFASLTYSSRTAEQWQDQTPDSVRYAL GMDAAKLGLPPSVNLNAVAKASGTVDLPMRLTNEARGNTTTLSVVSTDGVSVPKAVPVRMAAYNATTGLYEVTVPSTTAEAPPLILTWTPASPPGNQNPS STTPVVPKPVPVYEGVTLTPLKTKPESYPGVLLDLNDLIVIFPADSGVKPVYVMLSSPLDSGIFTRRQLQKKFDSHKYDFGLGEKKRQQWNACRV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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